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MetabolomicsCaffeine Enhances Antitumor T-cell Activity via COL12A1/IDO1/Kyn axis and Sensitivity to Anti-PD-1 Immunotherapy in Colorectal Cancer
Metabolomic sequencing on supernatants from caffeine-treated and untreated tumor cells to identify which metabolites are involved in activating CD8+ T cells
2025-05-06 | MTBLS11623 | MetaboLights
GenomicsStenotrophomonas maltophilia strain:Col1
Stenotrophomonas maltophilia strain:Col1 Genome sequencing
PRJNA739838 | ENA
ProteomicsPalaeoproteomics (COL1) of Chelonia mydas and Caretta caretta
We applied nanoscale liquid chromatography-tandem mass spectrometry (nanoLC-MS/MS) in four Caretta caretta reference specimens in order to resolve missing positions in the existing Type I collagen (COL1) sequence. We also found seven additional biomarkers that distinguished between C. mydas and C. c...
ORGANISM(S): Chelonia mydas Caretta caretta 
2023-07-17 | PXD036592 | Pride
Zooms Sea turtle Lc-msms 
TranscriptomicsForkhead Box F1 (FOXF1) represses fibroblast functions relevant to fibrogenesis
Aberrant expression of master phenotype regulators by lung fibroblasts may play a central role in idiopathic pulmonary fibrosis (IPF). Interrogating IPF fibroblast transcriptome datasets, we identified Forkhead Box F1 (FOXF1), a DNA-binding protein required for lung development, as a candidate actor...
ORGANISM(S): Homo sapiens 
2014-10-01 | E-GEOD-52612 | biostudies-arrayexpress
ProteomicsAncient proteins resolve the evolutionary history of Darwin's South American ungulates
The project aimed to characterize the collagen type I (COL1) sequences from Pleistocene Macrauchenia sp. and Toxodon sp. bone samples, and by comparison with existing COL1 sequences available from genomic sources establish the phylogenetic position of both extinct species. In order to resolve their ...
ORGANISM(S): unidentified Equus Orycteropus afer (Aardvark) Cyclopes didactylus (Silky anteater) (Myrmecophaga didactyla) Hippopotamus amphibius (Hippopotamus) Tapirus terrestris (Lowland tapir) (Brazilian tapir) Mylodon darwinii (Giant ground sloth) 
2015-03-19 | PXD001411 | Pride
Lc-ms/ms Macrauchenia Toxodon Bruker maxis hd De novo collagen sequencing Pleistocene Thermo scientific hybrid quadrupole-orbitrap 
ProteomicsCOL1 database samples for the Late Pleistocene of Western Eurasia
The project aimed to characterize the collagen type I (COL1) sequences from various modern, Holocene and Pleistocene bone, antler and skin samples for phylogenetic purposes. All extractions were performed at BioArCh, University of York (UK) or the Department of Human Evolution, MPI-EVA (Germany). An...
ORGANISM(S): Ursus americanus (American black bear) (Euarctos americanus) Capreolus capreolus (Roe deer) Aepyceros melampus Vulpes vulpes (Red fox) Crocuta crocuta (Spotted hyena) Castor fiber (Eurasian beaver) Capra ibex (Ibex) Panthera leo (Lion) Cuon alpinus (Dhole) Saiga tatarica (Saiga antelope) Cervus elaphus (Red deer) Gulo gulo (Wolverine) (Gluton) Meles meles (Eurasian badger) Rupicapra rupicapra (Chamois) Lynx lynx (Eurasian lynx) (Felis lynx) Coelodonta antiquitatis (woolly rhinoceros) Alces alces (Eurasian elk) Ursus maritimus (Polar bear) (Thalarctos maritimus) Lutra lutra (European river otter) Vulpes lagopus (Arctic fox) (Alopex lagopus) Martes martes (European pine marten) Axis axis (Axis deer) (Chital) Megaloceros giganteus (Giant deer) (Alces gigantea) Ursus arctos (Brown bear) (Grizzly bear) Rangifer tarandus (Reindeer) (Cervus tarandus) Equus hydruntinus 
2016-09-27 | PXD003190 | Pride
Lc-ms/ms Mammalia Q-exactive hybrid quadrupole-orbitrap ms De novo collagen sequencing 
ProteomicsZooMS and Shotgun Proteomics for Species Identification of the Nile Softshell Turtle (Trionyx triunguis)
We applied nanoscale liquid chromatography-tandem mass spectrometry (nanoLC-MS/MS) in a single Trionyx triunguis reference specimen to identify diagnostic COl1 peptide markers. Our analysis revealed four COL1 biomarkers that differentiate T. triunguis from all sea turtle species, as well as seven ad...
ORGANISM(S): Trionyx triunguis 
2026-02-16 | PXD062259 | Pride
Zooms Col1 Maldi-tof Turtle Archaeology Trionyx triunguis Lc-msms 
UnknownCOL1-Related Disorders: Case Report and Review of Overlapping Syndromes.
Not available
S-EPMC8138308 | biostudies-literature
UnknownUVA influenced the SIRT1-miR-27a-5p-SMAD2-MMP1/COL1/BCL2 axis in human skin primary fibroblasts.
Not available
S-EPMC7520305 | biostudies-literature
UnknownClinical and molecular features of patients with COL1-related disorders: Implications for the wider spectrum and the risk of vascular complications.
Not available
S-EPMC9545637 | biostudies-literature
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