Sort   by:  
 Page size 
ProteomicsDiscovery of novel covalent ligands with AlphaFold3
Covalent inhibitors are a prominent modality for research and therapeutic tools. However, a scarcity of computational methods for their discovery slows progress in this field. AI models such as AlphaFold3 (AF3) have shown accuracy in ligand pose prediction, but their applicability for virtual screen...
ORGANISM(S): Homo sapiens (Human) 
2026-04-06 | PXD072258 | Pride
Btk Alphafold 
ProteomicsStructural and mechanistic analysis of covalent ligands targeting the RNA-binding protein NONO
RNA-binding proteins (RBPs) play important roles in mRNA transcription, processing, and translation. Chemical tools are lacking for RBPs, which has hindered efforts to perturb and understand RBP function in cells. We recently reported a chloroacetamide compound (R)-SKBG-1 that covalently binds the ...
ORGANISM(S): Homo sapiens (Human) 
2026-02-23 | PXD064685 | Pride
Proteomics Chemical biology Rbps Rna-binding protein 
ProteomicsLC-MS/MS of SETDB1 3TD after incubation with covalent ligands
In order to confirm which amino acid of the 3TD of SETDB1 is covalently modified by a set of cysteine-targeting ligands, we performed LC-MS/MS on sample containing 40 uM of SETDB1 3TD with 400 uM of ligand after overnight incubation at 4 C.
ORGANISM(S): Homo sapiens (Human) 
2025-05-07 | PXD056206 | Pride
Setdb1 Unc9846 Unc10016 Unc10013 3td Unc10014 
ProteomicsESCAPE: assigning site-specific activity to covalent ligands in cells by prime editing
Chemical proteomics has identified covalent ligands targeting cysteine residues across hundreds of human proteins. The functional effects of these liganding events, however, remain challenging to assign at scale. Here we describe ESCAPE (Endogenous Site-specific Competition Assays using Prime Editor...
ORGANISM(S): Homo sapiens (Human) 
2026-09-22 | PXD081738 | Pride
Prime editing Cysteine Chemical proteomics Abpp 
UnknownSCARdock: A Web Server and Manually Curated Resource for Discovering Covalent Ligands.
Not available
S-EPMC10034828 | biostudies-literature
UnknownCovalent cannabinoid receptor ligands - structural insight and selectivity challenges.
Not available
S-EPMC9132230 | biostudies-literature
GenomicsRedirecting the pioneering function of FOXA1 with covalent small molecules
Redirecting the pioneering function of FOXA1 with covalent small molecules
PRJNA1143407 | ENA
GenomicsEngineering covalent small molecule–RNA complexes in living cells
Engineering covalent small molecule–RNA complexes in living cells
PRJNA1133002 | ENA
ProteomicsTargeted Protein Localization by Covalent 14-3-3 Recruitment
chemoproteomic profiling of covalent ligands that target 14-3-3
ORGANISM(S): Homo sapiens (Human) Mus musculus (Mouse) 
2024-08-28 | PXD054696 | Pride
14-3-3 
UnknownCysteine-reactive covalent chloro-N-acetamide ligands induce ferroptosis mediated cell death.
Not available
S-EPMC12635392 | biostudies-literature
Sort   by:  
 Page size