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ProteomicsHRMS1 DIA and DDA of Lyso-IP inputs from mouse gut epithelium and stem cells
These mouse gut lysates contained three sets, with Set A including 21 DDA experiments and 21 DIA experiments, Set C including 24 DDA and 24 DIA experiments, and Set G including 27 DDA RAWs and 26 DIA RAWs (one of the Set G DDA experiments was run twice). Experiment Set A was intended to compare lys...
ORGANISM(S): Mus Musculus (ncbitaxon:10090) 
2024-07-26 | MSV000095444 | MassIVE
ProteomicsLINE-1 ORF1p co-immunoprecipitations analyzed by DDA and two DIA methods
Using an anti-ORF1 monoclonal (clone 4H1; Milipore), four co-immunoprecipitations to enrich for LINE-1 ORF1p and its interactors as described in Di Stefano, L.H. et al. (https://doi.org/10.1007/978-1-0716-2883-6_12), from either HEK-293TLD (cells transfected with pMT646- containing a L1 sequence) or...
ORGANISM(S): Homo Sapiens (ncbitaxon:9606) 
2024-07-24 | MSV000095427 | MassIVE
ProteomicsDIA Based quantitative proteomics analysis reveals MAPK pathway a important role onthe Tremella fuciformis dimorphism
Tremella fuciformis is a dimorphic fungus that can undertake the reversible transition between yeast-like spores and hypha forms. In this project, we attempted to explore the differential proteins profile of dikaryotic yeast-like spores (FBMDS) and dikaryotic mycelium (DM) by applying the HRMS1-DIA ...
ORGANISM(S): Tremella 
2022-04-04 | PXD029989 | Pride
Tremella fuciformis dimorphism mapk signaling pathway 
UnknownStandardization and harmonization of distributed multi-center proteotype analysis supporting precision medicine studies.
Not available
S-EPMC7568553 | biostudies-literature
UnknownStudy of Dimorphism Transition Mechanism of Tremella fuciformis Based on Comparative Proteomics.
Not available
S-EPMC8955754 | biostudies-literature
ProteomicsTankyrase1/2 inhibition reveals that PARylation is regulating aerobic activities in hepatocytes and HepG2 cells
XAV-939 is an anti-oncogenic small molecule that potently inhibits tankyrase1/2 (TNKS1/2), thereby blocking protein poly ADP-ribosylation (PARylation) of pleiotropic protein targets. In the present study, XAV-939 was used to explore its potential for improving human-derived liver models in vitro. Ep...
ORGANISM(S): Homo sapiens (Human) 
2024-07-25 | PXD045988 | Pride
Human Dia hrms1 Tankyrase Ip Parylation 
ProteomicsStandardization and Harmonization of Distributed Multi-Center Proteotype Analysis supporting Precision Medicine Studies
Cancer has no borders: Generation and analysis of molecular data across multiple centers worldwide is necessary to gain statistically significant clinical insights for the benefit of patients. Here we conceived and standardized a proteotype data generation and analysis workflow enabling distributed ...
ORGANISM(S): Escherichia Coli (ncbitaxon:562) Homo Sapiens (ncbitaxon:9606) Saccharomyces Cerevisiae (ncbitaxon:4932) 
2020-02-18 | MSV000084976 | MassIVE
ProteomicsProteomics profiling of serum and liver in GSD Ia and Ib patients: insights into complication mechanisms and circulation biomarkers
Background: Glycogen Storage Disease (GSD) Type Ia and Ib are rare metabolic diseases caused by gene variants in G6PC and SLC37A4 respectively. Patients often suffer from multiple metabolic abnormalities and severe long-term complications. Methods: In this study, we employed comprehensive untargete...
ORGANISM(S): Homo sapiens (Human) 
2026-03-06 | PXD066805 | Pride
Human Liver Gsd i Serum/plasma 
ProteomicsAn epitranscriptomic mechanism regulating chlorophyll biosynthesis in Arabidopsis
Light modulates expression of nuclear-encoded chloroplast proteins to promote chlorophyll biosynthesis and photosynthesis in plants. Photoregulatory mechanisms regulating transcription and protein stability of nuclear-encoded chloroplast proteins have been extensively studied, but how photoresponsiv...
ORGANISM(S): Arabidopsis thaliana (Mouse-ear cress) 
2024-01-26 | PXD040660 | Pride
Fiona Light Chlorophyll M6a 
ProteomicsProteomic profiling of tissue and plasma from mares with endometrial fibrosis
Endometrial fibrosis causes subfertility in mares, and is characterized by excessive deposition of extracellular matrix. It is diagnosed by a histopathologic evaluation of a biopsy, but the prognostic value of a single biopsy is limited, and a better understanding of the pathogenesis is needed. To g...
ORGANISM(S): Equus caballus (Horse) 
2026-01-19 | PXD056558 | Pride
Endometrial proteome Fibrotic endometrial degeneration Data independent acquisition mass spectrometry Equine Reproduction 
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