Dna elimination

Show results for

Unknown (1504)
Genomics (508)
Transcriptomics (339)
Proteomics (46)
Other (31)
Metabolomics (15)
Methylation profiling (10)
Genomic (5)

Organisms

Homo sapiens (151)
Mus musculus (129)
Tetrahymena thermophila (28)
Schizosaccharomyces pombe (15)
Rattus norvegicus (13)
Drosophila melanogaster (13)
Arabidopsis thaliana (9)
Paramecium tetraurelia (8)
Ascaris suum (8)
Caenorhabditis elegans (7)
Saccharomyces cerevisiae (6)
Escherichia coli (5)
Danio rerio (4)
Trypanosoma cruzi (2)
Picea glauca (2)
Zea mays (2)
Salmo salar (2)
Solanum lycopersicum (2)
Oxytricha trifallax (2)
Nostoc sp. PCC 7120 = FACHB-418 (1)
Tetranychus cinnabarinus (1)
Rhizobium etli (1)
Saccharomyces cerevisiae BY4741 (1)
Scophthalmus maximus (1)
Leptospira interrogans (1)
Gossypium tomentosum (1)
Mustela putorius furo (1)
Marmota monax (1)
Thermus thermophilus HB8 (1)
Brugia malayi (1)

Organisms

Aspergillus nidulans (81)
Homo sapiens (71)
Mus musculus (38)
Tetrahymena thermophila (17)
Aspergillus flavus (16)
Aspergillus fumigatus (16)
Schizosaccharomyces pombe (8)
Parascaris univalens (7)
Ascaris suum (6)
Petromyzon marinus (6)
Paramecium tetraurelia (6)
Arabidopsis thaliana (5)
Oscheius tipulae (4)
Saccharomyces cerevisiae (4)
Drosophila melanogaster (4)
Streptococcus pyogenes (2)
Myxine limosa (1)
Schmidingerella arcuata (1)
Geotria australis (1)
Caspiomyzon wagneri (1)
Oleidesulfovibrio alaskensis (1)
Francisella tularensis subsp. tularensis SCHU S4 (1)
Oxytricha trifallax (1)
Bradysia coprophila (1)
Escherichia coli BL21(DE3) (1)
Eptatretus atami (1)
Yersinia pestis (1)
Mycobacterium leprae (1)
Oryza (1)
Chlorocebus sabaeus (1)

Repository

ENA (428)
biostudies-arrayexpress (290)
geo (163)
pride (36)
MetaboLights (14)
EGA (10)
MassIVE (7)
dbGaP (5)
jPOST (2)
GNPS (1)

Tissue

Cell culture (5)
Liver (3)
Epithelial cell (2)
Oocyte (2)
Blood (1)
Blood cell (1)
Bone marrow (1)
Ciliated cell (1)
Embryo (1)
Eukaryotic cell (1)
Keratinocyte (1)
Malignant cell (1)
Mammary epithelium (1)
Neuroblastoma cell line (1)
Permanent cell line cell (1)
Photosynthetic cell (1)
Skeletal muscle (1)
Soil (1)
Stem cell (1)
Stomach (1)
Testis (1)
Whole body (1)

Disease

Normal (2)
Liver carcinoma (2)
Hepatomegaly (1)
NF1 atypical neurofibroma (1)
Brain glioblastoma multiforme (1)
Neuroblastoma (1)
Osteosarcoma (1)
Plasmodium falciparum malaria (1)
Stomach cancer (1)

Technology Type

Mass Spectrometry (36)
Shotgun proteomics (20)
Mass spectrometry (14)
Bottom-up proteomics (7)
Affinity purification coupled with mass spectrometry proteomics (5)
Data-independent acquisition (2)
Top-down proteomics (2)
ILLUMINA, Illumina HiSeq 2500, NextSeq 500, Nanostring (1)
NMR spectroscopy (1)
Gel-based experiment (1)
MSE (1)
SRM/MRM (1)
SWATH MS (1)

Instrument Platform

Illumina HiSeq 2000 (8)
NextSeq 500 (8)
Illumina NovaSeq 6000 (7)
Liquid Chromatography MS - negative - reverse phase (6)
Liquid Chromatography MS - positive - reverse phase (4)
Illumina Genome Analyzer IIx (3)
Capillary electrophoresis MS - negative (3)
Capillary electrophoresis MS - positive (3)
Agilent G2505B scanner (2)
BAS-5000 [FUJIFILM] (2)
NextSeq 550 (2)
Illumina HiSeq 2500 (2)
QTRAP 6500 (2)
Q Exactive (2)
(Make:PerkinElmer,Model:ScanArray 4000XL) (1)
BD FACS JAZZ (1)
MoFlo Legacy cell sorter (Beckman Coulter) (1)
PC (1)
Scanning hardware (1)
HiSeq X Ten (1)
Illumina HiSeq 4000 (1)
LTQ XL (1)
Orbitrap Exploris 240 (1)
Q Exactive HF-X (1)
TimsTOF Pro (1)
QExactive (Thermo Scientific) (1)
Liquid Chromatography MS - Alternating (LC-MS (Alternating)) (1)
Liquid Chromatography MS - - reverse phase (1)
5975C Series GC/MSD (Agilent) (1)
Nuclear Magnetic Resonance (NMR) - (1)

Publication Date

2015 (45)
2012 (40)
2024 (38)
2014 (38)
2010 (38)
2013 (36)
2016 (35)
2023 (33)
2011 (24)
2025 (23)
2022 (23)
2026 (21)
2017 (19)
2021 (16)
2009 (16)
2008 (15)
2020 (13)
2019 (13)
2018 (11)
2007 (10)
2006 (3)
2004 (1)

CHEBI ID

CHEBI:17368 (9)
CHEBI:27823 (8)
CHEBI:18107 (8)
CHEBI:16411 (8)
CHEBI:27248 (8)
CHEBI:17568 (8)
CHEBI:10072 (7)
CHEBI:16359 (7)
CHEBI:73024 (7)
CHEBI:15741 (7)
CHEBI:7916 (7)
CHEBI:15428 (7)
CHEBI:16335 (7)
CHEBI:15354 (7)
CHEBI:17895 (7)
CHEBI:17596 (7)
CHEBI:18089 (7)
CHEBI:15676 (6)
CHEBI:16708 (6)
CHEBI:28790 (6)
CHEBI:27266 (6)
CHEBI:17405 (6)
CHEBI:16704 (6)
CHEBI:17418 (6)
CHEBI:15891 (6)
CHEBI:17311 (6)
CHEBI:15971 (6)
CHEBI:18295 (6)
CHEBI:15760 (6)
CHEBI:32816 (6)

Metabolite Name

FAD (4)
Taurine (4)
Riboflavin (4)
Inosine (4)
Xanthurenate (3)
3-methyl-tetradecanedioic acid (3)
Trans-Aconitate (3)
4-Methyl-2-oxopentanoate (3)
Methyl sulfate (3)
Propionate (3)
Butyrate (3)
Sulfolithocholylglycine (3)
Tanacetol A (3)
3'-AMP (3)
Hypoxanthine (3)
N-Acetyl-beta-alanine (3)
Urate (3)
Cholate (3)
N-Acetylleucine (3)
Pantothenate (3)
5-Oxoproline (3)
Kynurenic acid (3)
Choline (3)
Xanthosine (3)
N-Formylmethionine (3)
Porphobilinogen (3)
L-Tryptophan (3)
Dodecanedioic acid (3)
Cis-Aconitate (3)
Uridine (3)

First Public Date

2017 (102)
2016 (47)
2024 (45)
2023 (38)
2025 (37)
2026 (28)
2014 (26)
2020 (23)
2018 (17)
2022 (16)
2019 (13)
2015 (13)
2013 (12)
2021 (11)

Classification

fungi (113)
bacteria (8)
helminths (6)

Study type

Transcription profiling by array (151)
RNA-seq of coding RNA (45)
ChIP-seq (22)
RNA-seq of non coding RNA (16)
Comparative genomic hybridization by array (10)
ChIP-chip by tiling array (9)
Unknown experiment type (7)
Other (7)
Transcription profiling by tiling array (3)
DNA-seq (3)
Methylation profiling by array (3)
Genotyping by array (2)
Transcription profiling by RT-PCR (2)
High-throughput sequencing (1)
Animal - High-throughput sequencing (1)
RNAi profiling by array (1)
ChIP-chip by array (1)
MicroRNA profiling by high throughput sequencing (1)
Bisulfite-seq (1)
Methylation profiling by high throughput sequencing (1)
RNA-seq of total RNA (1)

Release Date

2022 (151)
2023 (140)
2020 (126)
2016 (121)
2015 (116)
2025 (115)
2024 (113)
2021 (113)
2019 (105)
2018 (90)
2017 (89)
2014 (75)
2013 (71)
2012 (65)
2010 (60)
2011 (58)
2008 (41)
2009 (36)
2007 (21)
2026 (18)
2006 (18)
2005 (16)
2004 (10)
2003 (6)
2001 (6)
2002 (5)
2000 (3)
1999 (2)
1998 (2)
1997 (2)

Lab affiliation

Laboratoire de Spectrométrie de Masse BioOrganique, Analytical Science department, IPHC, CNRS, Strasbourg University, UMR7178, Strasbourg, France (2)
State Key Laboratory of Oncology in South China (2)
Biochemistry and Molecular Genetics, Hematology and Oncology, Department of Medicine, Northwestern University, USA (1)
Caltech (1)
Cell Cycle and Genome Stability Group. Institute of Functional Biology and Genomics (IBFG). Spanish National Research Council (CSIC). University of Salamanca (USAL). C/ Zacarías González 2. Salamanca 37007. SPAIN (1)
Centro de Edafología y Biología Aplicada del Segura-CSIC, Murcia, Spain (1)
Departamento de Parasitologia Instituto de Ciências Biomédicas, Universidade de São Paulo Av. Prof. Lineu Prestes, 1374, sala 39, Sao Paulo, Brazil (1)
Departamento de interacción epidemiológica, Instituto Nacional de Salud Pública. Universidad No. 655, Col. Santa María Ahuacatitlán, Cuernavaca, Morelos. CP 62100. México. (1)
Department of Chromosome Biology, Max F. Perutz Laboratories, University of Vienna, Vienna BioCenter, Austria (1)
Department of Human Molecular Genetics and Biochemistry Sackler Faculty of Medicine Tel Aviv University Israel (1)
Department of Microbiology and Cell Biology, Montana State Univeristy (1)
Department of Pathogenic Biology, West China School of Basic Medical Sciences and Forensic Medicine, Sichuan University, Chengdu, China (1)
Guangdong Key Laboratory for Innovative Development and Utilization of Forest Plant Germplasm, College of Forestry and Landscape Architecture, South China Agricultural University, Guangzhou 510642, China (1)
IBMC, Moscow, Russia (1)
Institute of Cell Biology, University of Bern (1)
Institute of Cell Biology, University of Bern, Bern 3012, Switzerland (1)
Institute of Cell Biology, University of Bern, Bern, Switzerland (1)
Laboratory of Molecular Bases of Aging Nencki Institute of Experimental Biology (1)
Laboratory of Non-coding RNA and Genome Rearrangements, Institute of Biochemistry and Biophysics, PAS (1)
Laboratory of Non-coding RNA and Genome Rearrangements, Institute of Biochemistry and Biophysics, Polish Academy of Sciences, Warsaw, Poland (1)
Max Delbrück Center Robert-Rössle-Straße 10 13125 Berlin, Germany (1)
Max Planck Institute for Molecular Genetics, Ihnestrasse 63-72, 14195 Berlin, Germany (1)
Max-Planck-Institute for Biology (1)
Microbiology Department, Faculty of Sciences, Pontificia Universidad Javeriana, Bogotá 110231, Colombia Microbiology and Parasitology Department, Faculty of Pharmacy, Universidad Complutense de Madrid, Madrid 28040, Spain (1)
Monash Institute of Pharmaceutical Sciences, Monash University, Melbourne, Australia (1)
NUS Singapore (1)
National Cancer Institute, NIH Bethesda, MD 20892 (1)
Protein Analysis Unit ZfP BioMedical Center, LMU Munich Grosshaderner Strasse 9 82152 Planegg-Martinsried Tel. +49 89 2180 75420 (1)
Proteomics platform Necker, Université de Paris - Structure Fédérative de Recherche Necker, INSERM US24/CNRS UMS3633, Paris 75015, France. (1)
School of biomedical sciences, the university of Hong Kong (1)

Previous page
1 / 246
You're on page 1
page 2
page 3
page 4
page 5
page ...
page 246
Next page

Sort by:

Relevance

Page size

Biased transcription and selective degradation of small RNAs shape the pattern of DNA elimination in Tetrahymena

The ciliated protozoan Tetrahymena undergoes extensive programmed DNA elimination when the germline micronucleus produces the new macronucleus during sexual reproduction. DNA elimination is epigenetically controlled by DNA sequences of the parental macronuclear genome, and this epigenetic regulation...

ORGANISM(S): Tetrahymena thermophila

2012-06-21 | E-GEOD-38768 | biostudies-arrayexpress

Cytosine methylation and hydroxymethylation mark DNA for elimination in Oxytricha trifallax.

We report the existence of both methylcytosine and hydroxymethylcytosine in the genomic DNA of the ciliate Oxytricha trifallax during its genome rearrangement process. These modifications are dynamically added, de novo, to sequences targeted for elimination and are not present after the rearrangemen...

ORGANISM(S): Oxytricha trifallax

2012-09-26 | E-GEOD-41060 | biostudies-arrayexpress

A developmental condensin I complex assists the Paramecium PiggyMac domesticated transposase during programmed DNA elimination

Prokaryotes and eukaryotes use diverse strategies to cope with invading mobile genetic elements, including programmed DNA elimination (PDE). In the ciliate Paramecium, elimination of transposable elements and their relics requires the PiggyMac (Pgm) endonuclease and its five PgmL partners, yet how t...

ORGANISM(S): Paramecium tetraurelia

2026-04-01 | PXD068119 | Pride

Silencing of Germline-Expressed Genes by DNA Elimination in Somatic Cells

Chromatin diminution is the programmed elimination of specific DNA sequences during development. It occurs in diverse species, but the function(s) of diminution and the specificity of sequence loss remain largely unknown. Diminution in the nematode Ascaris suum occurs during early embryonic cleavage...

ORGANISM(S): Ascaris suum

2012-11-13 | E-GEOD-38470 | biostudies-arrayexpress

DNA elimination in Mesorhabditis_1

First description of Programmed-DNA Elimination in M. belari and M. spiculigera

PRJEB59059 | ENA

CENP-A Deposition Defines Sequences for Retention and Elimination during Programmed DNA Elimination in Nematode

Organisms invest significant effort into maintaining genome stability. However, in diverse groups of eukaryotes, portions or entire chromosomes are lost in early development or during sex determination, a process known as programmed DNA elimination. Little is known about how different segments of t...

ORGANISM(S): Ascaris suum

2016-07-15 | E-GEOD-76914 | biostudies-arrayexpress

Silencing factors induce the elimination of nucleosome-free regions in S. pombe heterochromatin

Abstract: In the yeast S. pombe, multiple chromatin-modifying enzymes are required for heterochromatin formation, yet how their actions alter chromatin structure to block access to DNAby the transcriptional machinery is unknown. We constructed high-resolution nucleosome occupancy maps of heterochrom...

ORGANISM(S): Schizosaccharomyces pombe

2010-11-24 | E-GEOD-19596 | biostudies-arrayexpress

Expression of small RNAs during epigenetic disturbances of Tetrahymena DNA elimination

PRJNA437297 | ENA

DNA elimination analysis of scnRNA production-defective Tetrahymena

Analysis of genome-wide IES elimination of Late-scnRNA accumulation-defective cells inducates that Early-scnRNAs are sufficient to induce DNA elimination for a majority of IESs, whereas Late-scnRNAs are important for DNA elimination of some, mainly Type-B, IESs. new MACs of exconjugants were isolate...

ORGANISM(S): Tetrahymena thermophila

2015-06-15 | E-GEOD-68457 | biostudies-arrayexpress

A histone methyltransferase-independent function of PRC2 controls small RNA dynamics during programmed DNA elimination in Paramecium

To limit transposable element (TE) mobilization, most eukaryotes have evolved small RNAs to silence TE activity via homology-dependent mechanisms. Small RNAs, 20-30 nucleotides in length, bind to PIWI proteins and guide them to nascent transcripts by sequence complementarity, triggering the recruitm...

ORGANISM(S): Paramecium tetraurelia

2025-09-22 | PXD063336 | Pride

Histone methyltransferase Programmed dna elimination Prc2 Small rna Paramecium

Previous page
1 / 246
You're on page 1
page 2
page 3
page 4
page 5
page ...
page 246
Next page

Sort by:

Relevance

Page size

2460 Results

Show results for

Organisms

Organisms

Repository

Tissue

Disease

Technology Type

Instrument Platform

Publication Date

CHEBI ID

Metabolite Name

First Public Date

Classification

Study type

Release Date

Lab affiliation

Tags

OmicsDI is part of the ELIXIR infrastructure

Tweets