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TranscriptomicsTranscription profiling of E. coli O157:H7 growth in the absence or presence of HEp-2 epithelial cells
E. coli O157:H7 global gene expression profile is altered during growth in the presence of Hep-2 cells, relative to the absence of cells; We used Affymetrix E. coli 2.0 genechips to determine gene expression changes Experiment Overall Design: E. coli O157:H7 total RNA extracts were collected after a...
ORGANISM(S): Escherichia coli O157:H7 
2009-03-28 | E-GEOD-14238 | biostudies-arrayexpress
UnknownDuffy blood system and G6PD genetic variants in vivax malaria patients from Manaus, Amazonas, Brazil.
Not available
S-EPMC9080172 | biostudies-literature
TranscriptomicsGene expression of triclosan susceptible and tolerant E. coli O157:H19 in response to triclosan exposure
Triclosan is a biocidal active agent commonly found in domestic cleaning products, hand sanitizers, cosmetics and personal care products. It is used to control microbial contamination and has a broad-spectrum of activity against many Gram-positive and Gram-negative bacteria. The development of tricl...
ORGANISM(S): Escherichia coli O157:H7 
2013-10-15 | E-GEOD-39343 | biostudies-arrayexpress
ProteomicsCarrier protein-enabled host cell proteome analysis (CP-HCP) with integrated isobaric tag interference filtering
We used TMT labelling to set up different experiment channels containing mixtures of the host cell carrier proteome (E coli) and mock biotherapeutic (BSA), to compare with interference detection channel to model and filter interference, a phenomenon where host cell proteins (HCPs) co-elute with high...
ORGANISM(S): Escherichia coli 
2026-01-12 | PXD049970 | Pride
Boost Host cell proteins Multi-plexed proteomics Tmt Carrier proteome Lc-ms Co-isolation Interference Co-fragmentation Dda 
UnknownEpidemiology of Plasmodium vivax in Duffy negatives and Duffy positives from community and health centre collections in Ethiopia.
Not available
S-EPMC10941426 | biostudies-literature
UnknownRole of Plasmodium vivax Duffy-binding protein 1 in invasion of Duffy-null Africans.
Not available
S-EPMC4896682 | biostudies-literature
UnknownEasy and fast method for expression and native extraction of Plasmodium vivax Duffy binding protein fragments.
Not available
S-EPMC5806264 | biostudies-literature
ProteomicsCarrier protein-enabled host cell proteome analysis (CP-HCP) with integrated isobaric tag interference filtering
We added increasing amounts of E coli carrier proteome to BSA, our moch recombinant protein to model interference of high-background BSA peaks with smaller peaks of E coli HCPs, using MS2 and MS3 methods to show co-fragmentation and co-elution based on similar m/z ratio. We created an interference d...
ORGANISM(S): Escherichia coli 
2026-01-12 | PXD050183 | Pride
Host cell proteins (hcps) Peptide-spectrum matches Tmt Co-elution Lc-ms Multiplexed proteomics Tryptic digest Interference Carrier proteome Data dependent acquisition Co-fragmentation 
UnknownMolecular genotyping of G6PD mutations and Duffy blood group in Afro-descendant communities from Brazilian Amazon.
Not available
S-EPMC6415611 | biostudies-literature
UnknownCopy Number Variations of Plasmodium vivax DBP1, EBP/DBP2, and RBP2b in Ethiopians Who Are Duffy Positive and Duffy Negative.
Not available
S-EPMC11481331 | biostudies-literature
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