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ProteomicsEfficiency of acetate-based isopropanol synthesis in Escherichia coli W is controlled by ATP availability
Due to increasing ecological concerns, recombinant microbial production of biochemicals from sustainable carbon sources like acetate is rapidly gaining importance. However, for establishing successful large-scale production scenarios, a solid understanding of metabolic driving forces is required to ...
ORGANISM(S): Escherichia coli 
2024-10-17 | PXD047939 | Pride
Acetate Isopropanol Ecoli Bioingeneering Ecoli w 
UnknownBiocatalytic Synthesis of Homochiral 2-Hydroxy-4-butyrolactone Derivatives by Tandem Aldol Addition and Carbonyl Reduction.
Not available
S-EPMC10127515 | biostudies-literature
TranscriptomicsE. coli MG1655 treated (G181D/R258C NusA) vs control (WT NusA) [II]
Transcription profiling of E. coli MG1655, representing the effect of G181D/R258C NusA in comparison to WT NusA Agilent one-color experiment,Organism: Escherichia coli ,Agilent Custom Ecoli Gene Expression Microarray 2x400k designed by Genotypic Technology Private Limited. (AMADID:72220)
ORGANISM(S): Escherichia coli 
2016-03-28 | E-GEOD-77009 | biostudies-arrayexpress
TranscriptomicsTranscription profiling of E.coli WT3100 and phoU mutant
Comparison of gene experission profiles of Ecoli WT3110 and phoU mutant Experiment Overall Design: DNA microarray analysis of the PhoU mutant with the wild type strain W3110 as a control. The PhoU mutant and the wild type strain were grown in MOPS minimal medium overnight when the RNA was isolated u...
ORGANISM(S): Escherichia coli 
2008-06-15 | E-GEOD-7243 | biostudies-arrayexpress
ProteomicsDynamic 3D proteomes reveal functional pathway alterations in situ
Many biological processes are regulated via molecular events, such as intermolecular interactions and chemical modifications, which do not affect protein levels and escape detection in classical proteomic screens. Reasoning that these events affect protein structure, we propose here that a global pr...
ORGANISM(S): Escherichia coli Saccharomyces cerevisiae (Baker's yeast) 
2020-11-02 | PXD022297 | Pride
Lc-msms Heat shock Metabolism Dia Limited proteolysis Structural barcodes Osmotic stress Dda Structure-function Shotgun proteomics 
ProteomicsProteome profiling of cultivated Echerichia coli isolates from Crohn's disease patients
One of the dysbioses often observed in CD patients is an increased abundance of Escherichia coli (10-100 fold compared to healthy individuals) [Gevers et al., 2014]. E. coli isolates collected from CD and healthy patients were cultivated on LB medium at aerobic conditions up to medium log phase and...
ORGANISM(S): Escherichia coli 
2019-08-15 | PXD010920 | Pride
Crohn's disease Hplc-ms/ms Proteome E. coli 
TranscriptomicsExpression data from mouse model of Ecoli mastitis
We performed a genome-wide transcriptional analysis in the mammary gland in a mouse model of E. coli mastitis using high-density mouse oligonucleotide microarrays. This global transcription analysis revealed that about 7% of tested genes are mobilized in the mouse mammary gland to E. coli endotoxin....
ORGANISM(S): Mus musculus 
2011-06-29 | E-GEOD-14485 | biostudies-arrayexpress
UnknownPromoter-sequence determinants and structural basis of primer-dependent transcription initiation in Escherichia coli.
Not available
S-EPMC8271711 | biostudies-literature
ProteomicsC9ORF72 repeat expansion affects the proteome of primary skin fibroblasts in ALS and FTD
The study design involves the proteomics characterization of primary skin fibroblast cell lines derived from skin biopsies from patients affected by either amyotrophic lateral sclerosis (ALS) or frontotemporal dementia (FTD). Patients enrolled were divided in three groups: 1) ALS patients carrying t...
ORGANISM(S): Homo sapiens (Human) 
2021-11-02 | PXD023866 | Pride
Human Hdmse Als Fibroblast 
ProteomicsTwo aminoacyl-tRNA synthetase complexes anchored to the Plasmodium surface tRNA import protein
Aminoacyl-tRNA synthetases (aaRSs) attach amino acids to their cognate transfer RNAs. In eukaryotes, a subset of cytosolic aaRSs is organized into a multi-synthetase complex (MSC), along with specialized scaffolding proteins referred to as aaRS-interacting multifunctional proteins (AIMPs). In Plasmo...
ORGANISM(S): Mus musculus (Mouse) Escherichia coli 
2022-06-09 | PXD033057 | Pride
Aminoacyl-trna synthetase-interacting multifunctional proteins (aimp) Gst-like domain Aminoacyl-trna synthetase Protein complex Trna Rna binding protein Cell surface protein multi-aminoacyl-trna synthetase complex (mars/msc) 
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