Fgcz - OmicsDI

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Genomics (95)
Proteomics (36)
Unknown (27)
Transcriptomics (20)
Metabolomics (4)

Organisms

Schizophyllum commune H4-8 (31)
Mycobacterium tuberculosis SP7 (31)
Oryza sativa Japonica Group (31)
Crotalus durissus terrificus (31)
Eriocheir sinensis (31)
Candidatus Endoriftia persephonae (31)
Mycobacterium tuberculosis SP10 (31)
Mycobacterium tuberculosis SP13 (31)
Cotesia typhae (31)
Mycobacterium tuberculosis SP22 (31)
Cepaea nemoralis (31)
Enterobacter ludwigii (31)
Corynebacterium diphtheriae bv. mitis str. ISS 3319 (31)
Olea europaea (31)
Chlamydomonas reinhardtii (31)
Lama (31)
Planorbella pilsbryi (31)
Wolbachia sp. wMelPop (31)
Mus musculus (8)
Coprinopsis cinerea (2)
Methanobrevibacter ruminantium (1)
Blumeria graminis (1)
Malus domestica (1)
Staphylococcus aureus (1)
Salmonella enterica subsp. enterica serovar Typhimurium (1)
Caenorhabditis elegans (1)
Triticum aestivum (1)
Escherichia coli str. K-12 substr. MG1655 (1)
Arabidopsis thaliana (1)
Bos taurus (1)

Organisms

Mus musculus (36)
Homo sapiens (22)
Bos taurus (7)
Canis lupus familiaris (3)
Caenorhabditis elegans (2)
Cronobacter turicensis (1)
Dermanyssus gallinae (1)
Ovis aries (1)
Candida albicans (1)
Solanum lycopersicum (1)
Danio rerio (1)
Arabidopsis thaliana (1)
Rattus norvegicus (1)
Oryza sativa Japonica Group (1)

Repository

ENA (95)
pride (31)
biostudies-arrayexpress (19)
MassIVE (5)
MetaboLights (4)
geo (1)

Tissue

Dental plaque (7)
Cell culture (4)
Cell suspension culture (3)
Embryonic stem cell (2)
Brain (2)
Blood plasma (2)
Whole body (2)
Alveolar bone (1)
Wound fluid (1)
Neoplastic cell (1)
Optic nerve (1)
Tooth (1)
Keratinocyte (1)
Skin (1)
Leaf (1)
Hepatocyte (1)
Epithelial cell (1)

Disease

Periodontitis (1)
Brain cancer (1)
COVID-19 (1)
Disease free (1)

Technology Type

Mass Spectrometry (31)
Shotgun proteomics (20)
Data-independent acquisition (6)
Mass spectrometry assay (3)
Affinity purification coupled with mass spectrometry proteomics (3)
Bottom-up proteomics (2)
Mass spectrometry (1)
SWATH MS (1)
Data-dependent acquisition (1)

Instrument Platform

Q Exactive (5)
Illumina HiSeq 2500 (3)
Illumina NovaSeq 6000 (2)
Illumina HiSeq 2000 (2)
LTQ Orbitrap Velos (2)
LTQ Orbitrap Elite (2)
Illumina NovaSeq X (1)
Illumina HiSeq 4000 (1)
MaXis (1)
Liquid Chromatography MS - negative - capillary-hilic-/-beh-amide (1)
Liquid Chromatography MS - negative - hilic-(hydrophilic-interaction-liquid-chromatography)-/-beh-amide (1)
Liquid Chromatography MS - negative - HILIC (1)
Liquid Chromatography MS - negative - hilic (1)
Liquid Chromatography MS - positive - reverse phase (1)

Publication Date

2015 (9)
2026 (8)
2016 (8)
2022 (6)
2023 (5)
2024 (4)
2021 (4)
2018 (4)
2025 (3)
2014 (2)
2020 (2)
2013 (1)
2012 (1)
2010 (1)
2017 (1)
2019 (1)

Metabolite Name

Quercetin-3-D-xyloside (Reynoutrin) (1)
Procyanidin B peak4 (1)
Isorhamnetin 3-L-arabinopyranosyl-(1->6)-galactoside (1)
Isorhamnetin 3-xylosyl-(1->6)-glucoside (1)
Isorhamnetin 3-vicianoside (1)
Myricetin 3,4'-di-O-alpha-L-rhamnopyranoside (1)
Quercetin 3-rhamnoside-3'-glucoside (1)
Annulatin 7-rhamnoside-3'-xyloside (1)
Myricetin 3-rhamnosyl-(1->2)-rhamnoside (1)
8-C-Glucosylquercetin 2''-O-rhamnoside (1)
Herbacetin 8-rutinoside (1)
6-Hydroxykaempferol 3-rutinoside (1)
Robinetin 3-rutinoside (1)
Quercetin 3-methyl ether 7-alpha-L-arabinofuranosyl-(1->6)-glucoside (1)
Isorhamnetin 3-xylosyl-(1->2)-galactoside (1)
Isorhamnetin 3-sambubioside (1)
Isorhamnetin 3-glucoside-7-xyloside (1)
Isorhamnetin 3-glucoside-7-alpha-L-arabinopyranoside (1)
Kaempferol 7,4'-diglucoside (1)
Kaempferol 3,5-diglucoside (1)
8-Hydroxyapigenin 8-sophoroside (1)
Luteolin 3',4'-diglucoside (1)
Luteolin 7-laminaribioside (1)
Orientin 3'-O-glucoside (1)
6-C-Glucosylkaempferol 3-O-glucoside (1)
Isorhamnetin 3-apiosyl-(1->2)-galactoside (1)
Isorhamnetin 3-apiosyl-(1->2)-glucoside (1)
Luteolin 7-galactosyl-(1->6)-galactoside (1)
Luteolin 7-gentiobioside (1)
Quercetin 3-glucoside-7-rhamnoside (1)

First Public Date

2025 (17)
2026 (15)
2014 (14)
2024 (12)
2023 (7)
2022 (7)
2015 (5)
2021 (4)
2013 (4)
2019 (3)
2018 (3)
2020 (2)
2016 (2)

Classification

fungi (1)
bacteria (1)

Study type

RNA-seq of coding RNA (9)
Transcription profiling by array (6)
Animal - High-throughput sequencing (1)
Single nucleus RNA sequencing (1)
RNA-seq of coding RNA from single cells (1)
RNA-seq of non coding RNA (1)

Release Date

2016 (10)
2024 (4)
2021 (4)
2015 (4)
2025 (3)
2013 (3)
2023 (3)
2017 (3)
2026 (2)
2018 (2)
2010 (2)
2022 (2)
2014 (1)
2012 (1)
2020 (1)
2019 (1)

Lab affiliation

BioArCh, University of York, UK (5)
Nanoparticle Systems Engineering Laboratory Department of Mechanical and Process Engineering ETH Zurich, Switzerland (2)
Institute for Infectious Diseases, University of Bern, Switzerland (2)
Department of Microbiology & Molecular Medicine and Geneva Center for Inflammation Research (GCIR), Faculty of Medicine, University of Geneva, Rue Michel Servet 1, 1211 Genève 4, Switzerland. (1)
University Children's Hospital, Tissue Biology Research Unit, Switzerland (1)
Laboratory of Applied Microbiology (LMA), Department for Environmental Constructions and Design (DACD), University of Applied Sciences and Arts of Southern Switzerland (SUPSI), via Mirasole 22a, Bellinzona, Switzerland (1)
University of Zürich / University Hospital Zürich, Switzerland, Clinic of Gynecology (1)
University of Zurich, Institute for Medical Virology, Switzerland (1)
Head of Research Department of Obstetrics University Hospital Zurich Schmelzbergstrasse 12 PATH G48 / PF 125 CH-8091 Zürich Switzerland (1)
Institute of Pharmacology and Toxicology, University of Zurich, Switzerland (1)
Department of Anthropology, University of Oklahoma, USA (1)
Institute of Biodynamics and Biocomplexity (IBB) Department of Biology Faculty of Science Utrecht University Kruytbuilding N806 Padualaan 8, 3584 CH Utrecht The Netherlands (1)
Genome Biology and Epigenetics, Institute of Biodynamics and Biocomplexity, Department of Biology, Utrecht University, Utrecht, The Netherlands (1)
University Hospital Zurich, Department of Infectious diseases and Hospital Epidemiology, Switzerland (1)
ICAR-National Institute for Plant Biotechnology, Pusa Campus, New Delhi, India -110012 (1)
Energy Metabolism Laboratory Institute of Translational Medicine Dept. of Health Sciences and Technology ETH Zurich (Swiss Federal Institute of Technology) 16, Schorenstrasse, Building SLA C6 Schwerzenbach-Zurich, CH-8603 Switzerland (1)
Agroscope Institute for Food Sciences Schloss 1 8820 Waedenswil Switzerland (1)
Department of Neurology, University Hospital of Zurich (USZ) and University of Zurich (UZH) (1)
Faculty of Science (MNF), Department of Chemistry, University of Zurich (UZH) (1)
Institute of Pharmaceutical Sciences, Swiss Federal Institute of Technology (ETH) Zurich, 8093 Zurich, Switzerland (1)
Functional Genomics Center Zurich Winterthurerstr. 190 CH-8057 Zurich, Switzerland (1)
ICAR-NRCPB, LBS Centre, Pusa Campus, IN-110012 New Delhi (1)
University of Zurich, Institute of Pharmacology and Toxicology, Zurich, Switzerland (1)
Max Planck Institute for the Science of Human History (1)
Institute of Molecular Health Sciences, Department of Biology, ETH Zürich; Zürich, Switzerland (1)

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prolfqua: A Comprehensive R-Package for Proteomics Differential Expression Analysis.

Not available

S-EPMC10088014 | biostudies-literature

Direct evidence of milk consumption from ancient human dental calculus, northern Europe

This study investigated the consumption of milk products in the archaeological record, utilizing human dental calculus as a reservoir of dietary proteins from archaeological samples from across Eurasia. Protein extraction and generation of tryptic peptides from dental calculus was performed using a ...

ORGANISM(S): Homo sapiens (Human)

2015-02-25 | PXD001361 | Pride

Global Transcriptomic Analysis of the Canine corpus luteum (CL) During the First Half of Diestrus and Changes Induced by in vivo Inhibition of Prostaglandin Synthase 2 (PTGS2/COX2).

Not available

S-EPMC6863809 | biostudies-literature

Human dental calculus LC-MS/MS

The purpose of this study was to investigate oral microbiome and host proteins in archaeological human dental tissues using a shotgun proteomics approach. The research focuses on dental calculus (mineralized plaque), dentine, a carious lesion, and an alveolar bone abscess from the medieval site of D...

ORGANISM(S): Bos taurus (Bovine) Homo sapiens (Human) Ovis

2014-01-29 | PXD000412 | Pride

Human Caries Ltq-orbitrap velos Cementum Maxis uhr-qq-tof Medieval Dentine Dental calculus Cattle Abscess Bone Dental plaque Q-exactive hybrid quadrupole orbitrap Sheep Archaeological Periodontitis

C-terminal amides mark proteins for degradation via SCF/FBXO31 – Expression Proteomics

FBXO31 is a substrate adapter for the SCF-type ubiquitin ligase complex SCF/FBXO31 which ubiquitylates C-terminal amide-bearing proteins (CTAPs), thereby triggering their proteasomal degradation in human cells. FBXO31(D334N) is a dominant de novo mutation found among patients with cerebral palsy. T...

ORGANISM(S): Homo sapiens (Human)

2024-11-05 | PXD055818 | Pride

Tmt Ubiquitin ligase Fbxo31

Direct evidence of milk consumption from ancient human dental calculus, St Helena

ORGANISM(S): Homo sapiens (Human)

2015-02-25 | PXD001357 | Pride

Human Beta-lactoglobulin Dental calculus Dental plaque Lc-ms/ms

Direct evidence of milk consumption from ancient human dental calculus, northern southwest Asia

ORGANISM(S): Homo sapiens (Human)

2015-02-26 | PXD001359 | Pride

Human Beta-lactoglobulin Dental calculus Dental plaque Lc-ms/ms

Direct evidence of milk consumption from ancient human dental calculus, central Europe

ORGANISM(S): Homo sapiens (Human)

2015-02-25 | PXD001360 | Pride

Human Beta-lactoglobulin Dental calculus Dental plaque Lc-ms/ms

Direct evidence of milk consumption from ancient human dental calculus, UK

ORGANISM(S): Homo sapiens (Human)

2015-02-26 | PXD001362 | Pride

Human Beta-lactoglobulin Dental calculus Dental plaque Lc-ms/ms

Impact of miRNA Levels, Target-Site Complementarity and Cooperativity on ceRNA-Regulated Gene Expression

Expression changes of competitive endogenous RNAs (ceRNAs) have been proposed to influence microRNA (miRNA) activity and thereby regulate other transcripts that contain miRNA binding sites. Here, we find that although miRNA levels define the extent of repression, they do not affect the magnitude of ...

ORGANISM(S): Mus musculus

2016-10-27 | E-GEOD-76288 | biostudies-arrayexpress

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