Ftir - OmicsDI

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Unknown (8936)
Genomics (83)
Proteomics (31)
Transcriptomics (18)
Metabolomics (5)
Models (1)

Organisms

Schizophyllum commune H4-8 (21)
Mycobacterium tuberculosis SP7 (21)
Oryza sativa Japonica Group (21)
Candidatus Endoriftia persephonae (21)
Mycobacterium tuberculosis SP10 (21)
Mycobacterium tuberculosis SP13 (21)
Mycobacterium tuberculosis SP22 (21)
Chlamydomonas reinhardtii (21)
Pyricularia oryzae P131 (21)
Enterococcus mundtii CRL35 (21)
Oncorhynchus tshawytscha (21)
Bacillus subtilis (4)
Homo sapiens (3)
Paxillus involutus (2)
Bacillus subtilis subsp. subtilis str. 168 (2)
Mus musculus (2)
Bos taurus (2)
Saccharomyces cerevisiae S288C (1)
Arabidopsis thaliana (1)
Sporisorium scitamineum (1)
Paxillus involutus ATCC 200175 (1)
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 (1)
Perna viridis (1)
Danio rerio (1)
Acinetobacter lwoffii NIPH 478 (1)
Lysinibacillus capsici (1)
Rattus norvegicus (1)
Escherichia coli (1)
cellular organisms (1)
Pseudomonas aeruginosa (1)

Organisms

Bacillus subtilis (3)
Lactococcus lactis subsp. lactis Dephy 1 (2)
Acinetobacter calcoaceticus (2)
Homo sapiens (2)
Bacillus subtilis subsp. natto HSF 1410 (1)
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 (1)
Paxillus involutus (1)
fertilizer metagenome (1)
Sporisorium scitamineum (1)
Alcaligenes nematophilus (1)
Perna viridis (1)
rat gut metagenome (1)
biofilm metagenome (1)
Escherichia coli (1)
Danio rerio (1)
Bos taurus (1)
root metagenome (1)
Mus musculus (1)

Repository

ENA (83)
pride (21)
geo (12)
biostudies-arrayexpress (6)
iProX (5)
MassIVE (4)
MetaboLights (4)
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jPOST (1)

Tissue

Bone (3)
Skin (3)
Plant cell (3)
Long bone (2)
Egg (2)
Tendon (2)
Cell culture (2)
True leaf (1)
Meso-epithelium (1)
Pleura (1)
Bladder urothelial cell (1)
Seedling (1)
Lymph node (1)
Root (1)
Dendritic cell (1)
Lung (1)
Urinary bladder (1)
Saliva (1)

Disease

Malignant mesothelioma (1)
Brain glioblastoma multiforme (1)
COVID-19 (1)
Bladder transitional cell carcinoma (1)
Wounds and Injuries (1)

Technology Type

Mass Spectrometry (21)
Shotgun proteomics (13)
Bottom-up proteomics (3)
Mass spectrometry (2)
Gel-based experiment (2)
NMR spectroscopy (1)
Mass spectrometry assay (1)
Mass spectrometry imaging (1)
HDMSE (1)
SWATH MS (1)
Data-dependent acquisition (1)

Instrument Platform

Agilent 6890N/5973inert (2)
1200 series LC/MSD SL (2)
Q Exactive (2)
DNBSEQ-G400 (1)
Illumina HiSeq 4000 (1)
Orbitrap Exploris 480 (1)
Orbitrap Fusion Lumos (1)
Exactive (Thermo Scientific) (1)
Nuclear Magnetic Resonance (NMR) - (1)
Liquid Chromatography MS - positive - reverse-phase (1)
Liquid Chromatography MS - negative - reverse-phase (1)
Liquid Chromatography MS - negative - reverse phase (1)

Publication Date

2025 (9)
2026 (7)
2022 (7)
2023 (5)
2020 (4)
2024 (4)
2011 (3)
2021 (3)
2017 (3)
2013 (2)
2012 (2)
2018 (2)
2016 (1)
2019 (1)

CHEBI ID

CHEBI:132192 (1)
CHEBI:90140 (1)
CHEBI:132185 (1)
CHEBI:132184 (1)
CHEBI:132177 (1)
CHEBI:62805 (1)
CHEBI:5634 (1)
CHEBI:194126 (1)
CHEBI:194125 (1)
CHEBI:194123 (1)
CHEBI:73765 (1)
CHEBI:194122 (1)
CHEBI:194120 (1)
CHEBI:194119 (1)
CHEBI:194118 (1)
CHEBI:178211 (1)
CHEBI:132187 (1)
CHEBI:43619 (1)
CHEBI:131420 (1)
CHEBI:111510 (1)
CHEBI:5721 (1)
CHEBI:191156 (1)
CHEBI:132176 (1)
CHEBI:194124 (1)
CHEBI:2631 (1)
CHEBI:1945 (1)
CHEBI:176204 (1)
CHEBI:3960 (1)
CHEBI:132712 (1)
CHEBI:16514 (1)

Metabolite Name

1H-Indole, 1-(trimethylsilyl)-3-[2-[(trimethylsilyl)oxy]ethyl]- (1)
N,N-bis [2-Trimethylsiloxyethyl] ethanamine (1)
Beta-D-Galactopyranoside, methyl 2,3-bis-O-(trimethylsilyl)-, diacetate (1)
1-Cyclohexene-1-carboxylic acid, 3,4,5-tris[(trimethylsilyl)oxy]-, trimethylsilyl ester, [3R-(3alpha,4alpha,5beta)]- (1)
Myo-Inositol, 1,2,3,4,5,6-hexakis-O-(trimethylsilyl)- (1)
2-Naphthyl-beta-D-galactopyranoside (1)
D-Erythrotetrofuranose, tris-O-(trimethylsilyl)- (1)
Galactopyranose, 1,2,3,4,6-pentakis-O-(trimethylsilyl)-, beta-d- (1)
D-Galactose, 2,3,4,5,6-pentakis-O-(trimethylsilyl)- (1)
1-Butanone, 2-chloro-3-methyl-1-[4-(1-methylethyl)phenyl]- (1)
N,O-Bis-(trimethylsilyl)isoleucine (1)
Propanoic acid, 2-methyl-2-[(trimethylsilyl)oxy]-, trimethylsilyl ester (1)
Benzeneethanamine, N,alpha-dimethyl-beta-[(trimethylsilyl)oxy]- (1)
Cer18:1;O3/26:0;O (1)
Cer18:0;O3/24:0;O (1)
Cer18:1;O3/24:0;O (1)
Cer 18:1;O3/23:0;O (1)
Cer18:1;O3/24:0;O2 (1)
Cer 18:1;O3/22:0; O (1)
Cer 18:1; O3/22:0;O2 (1)
Hydroxytetracosanoic acid (1)
Soyacerebroside (HexCer 18:2;O2/16:0;O) (1)
Dihydroxy-triacetoxy-tetratriacontanoic acid (1)
Trihydroxy-diacetoxy-tetratriacontanoic acid III (1)
Trihydroxy-diacetoxy-tetratriacontanoic acid II (1)
Trihydroxy-diacetoxy-tetratriacontanoic acid I (1)
Dihydroxy-triacetoxy-dotriacontanoic acid (1)
Tetrahydroxy-monoacetoxy-tetratriacontanoic acid II (1)
Palmitoyl-sulfoquinovosyl-glycerol (1)
Tetrahydroxy-monoacetoxy-tetratriacontanoic acid I (1)

IsPrivate

False (1)

Submitter Keywords

Manuscript Accepted (1)

First Public Date

2025 (17)
2024 (15)
2026 (11)
2023 (7)
2022 (6)
2020 (5)
2019 (5)
2021 (4)
2013 (4)
2018 (3)
2014 (3)
2016 (2)
2015 (1)

Classification

bacteria (3)

Modelling Approach

Constraint-based model (1)

Study type

Transcription profiling by array (4)
RNA-seq of total RNA (1)
RNA-seq of coding RNA (1)

Release Date

2025 (1363)
2022 (1361)
2023 (1269)
2024 (1060)
2021 (1006)
2020 (783)
2019 (586)
2018 (456)
2026 (232)
2017 (220)
2016 (165)
2015 (111)
2014 (82)
2013 (54)
2012 (51)
2011 (43)
2010 (25)
2008 (21)
2009 (18)
2006 (13)
2007 (7)
2005 (6)
2004 (5)
2001 (3)
2003 (1)
2002 (1)

Lab affiliation

Natural History Museum of Denmark University of Copenhagen, Øster Voldgade 5–7, 1350 Copenhagen, Denmark (2)
Medical Proteome Center, Ruhr-University Bochum, Bochum, Germany (1)
Department of Electrical Engineering and Electronics University of Liverpool Liverpool (1)
Department of Food Science and Technology, The Ohio State University, Columbus, OH, USA (1)
University of Health Sciences Turkey (1)
QIMR Berghofer Medical Research Institute (1)
INBIOTEC-CONICET (1)
Nanomedicine and Nanotoxicology Group, Physics Institute of São Carlos, São Paulo University. Avenida Trabalhador São Carlense, 400, CEP13560970 (Brazil) Phone: (+55) 16 3373 8656, São Carlos – SP – Brazil. (1)
Forensic Science Research Group, Faculty of Health and Life Sciences, Applied Sciences, Northumbria University, NE1 8ST, Newcastle Upon Tyne, UK (1)
Intercollegiate Faculty of Biotechnology University of Gdansk Poland (1)
Assistant Professor at Department of Chemical and Pharmaceutical Sciences, University of Trieste, Italy (1)
Institute for Environmental Genomics, University of Oklahoma, Norman, OK 73019, USA (1)
Aalborg University, Department of Chemistry and Bioscience, Fredrik Bajers Vej 7H, 9220 Aalborg, Denmark (1)
Section for Evolutionary Genomics, GLOBE Institute, University of Copenhagen, Copenhagen, Denmark; McDonald Institute for Archaeological Research, University of Cambridge, Cambridge, UK. (1)
Universidade Federal de Pelotas, Instituto de Biologia. Campus Capão do Leão - Prédio 14, Sala 304 Campus Universitário 96160000 - Capão do Leão, RS - Brasil Telefone: (51) 37147000 (1)
Ruhr-Universität Bochum Medizinisches Proteom-Center AG Clinical Proteomics (1)
Laboratory of Mass Spectrometry, Intercollegiate Faculty of Chemistry, University of Gdansk, Poland (1)
Professor Deaprtment of Botany University of Delhi Delhi-110007 (1)
Globe Institute, University of Copenhagen, Denmark (1)
Department of Glycobiology, Institute of Chemistry, Slovak Academy of Sciences (1)

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Evaluation of FTIR oubtreak detecion for VREfm

PRJEB82335 | ENA

E. cloacae complex FTIR typing

Typing of clinical E. cloacae complex isolates by FTIR spectroscopy

PRJEB33003 | ENA

Spectral histopathology supported laser capture microdissection and quantitative proteome analysis of diffuse malignant mesothelioma

FTIR based spectral histopathology was used for label-free classification of tumor tissue sections. The regions of interest were identified and annotated with high spatial resolution. The spatial information was used for automated laser capture microdissection of relevant tissue areas. Subsequently,...

ORGANISM(S): Homo sapiens (Human)

2017-03-31 | PXD004818 | Pride

FTIR-based serotyping of Streptococcus pneumoniae clinical isolates

Whole-genome sequencing data from invasive Streptococcus pneumoniae isolates used to evaluate FTIR-based serotyping against WGS and PCR-hybridization.

PRJEB121064 | ENA

Detection SARS-CoV-2 infection in mice by ATR-FTIR

Vero-E6 cell supernatant, mice lavage and human saliva were evaulated after exposure to SARS-CoV-2 via ATR-FTIR spectoscopy. To provide further information about the physiological response, proteins contained in the mouse lavage were assessed via shotgun proteomics (data shown here). Mice were expos...

ORGANISM(S): Homo sapiens (Human)

2021-12-17 | PXD030012 | Pride

Sars-cov-2 Ftir Covid-19

FTIR WGS

Performance of the IR Biotyper, Nanopore, and Illumina sequencing to discriminate Avian Pathogenic Escherichia coli clones

PRJEB104171 | ENA

FTIR, XPol, and LC-MS confirm endogenous collagen in Edmontosaurus fossil bone C4PR_LIV

Reports of proteins in fossilized bones have ignited an on-going debate because previously it was generally assumed that fossilization results in destruction of all organic components. We combine Attenuated Total Reflection (ATR) Fourier Transform InfraRed (FTIR) spectroscopy, cross-polarized light ...

ORGANISM(S): Bos taurus (Bovine) Meleagris gallopavo (Common turkey) Dinosauria

2025-03-24 | PXD048810 | Pride

Dinosaur Collagen Fossil

Evaluation of FTIR oubtreak detecion for ESBL-Kp

PRJEB51676 | ENA

Clostridioides difficile investigation by FTIR spectroscopy

PRJNA1199010 | ENA

Typing E. cloacae complex with FTIR spectrscopy

PRJNA554224 | ENA

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