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ProteomicsTetrasphaera elongata prospers in dynamic oxic/anoxic systems by metabolic pre-adaptation and dismissal of the hierarchical control of anaerobic gene expression
The physiological adaptations of the WWTP isolate T. elongata str. LP2 during an oxic/anoxic shift experiment were analyzed by HRMS-proteomics. E. coli was used as reference organism as it shares several metabolic capabilities and is regularly introduced to wastewater treatment plants, but without s...
ORGANISM(S): Tetrasphaera elongata Lp2 
2019-03-18 | PXD005211 | Pride
Pao Anaerobic Tetrasphaera elongata Wastewater treatment Polyphosphate Poly-p Anoxic 
ProteomicsMetaproteomics: Optimization and evaluation of protein extraction from activated sludge
Metaproteomic studies of full-scale activated sludge systems require reproducible protein extraction methods. A systematic evaluation of three different extractions protocols, each in combination with three different methods of cell lysis, and a commercial kit were evaluated. Criteria used for comp...
ORGANISM(S): environmental samples 
2014-08-15 | PXD000862 | Pride
Sewage Denitrification Activated sludge Nitrification Wastewater 
ProteomicsProteogenomic refinement of the Neomegalonema perideroedes genome annotation
Neomegalonema perideroedes (formerly Meganema perideroedes) str. G1 is the type strain and only described isolate of the genus Neomegalonema (formerly Meganema). N. perideroedes is distinguished by the ability to accumulate high amounts of polyhydroxyalkanoates and has been associated with bulking p...
ORGANISM(S): Meganema perideroedes 
2019-03-20 | PXD008508 | Pride
Meganema Proteogenomics Bulking Pha Wastewater treatment 
ProteomicsMajor Proteomic Changes Associated with Amyloid Induced Biofilm Formation in Pseudomonas aeruginosa PAO1
The newly identified functional amyloids in Pseudomonas (Fap) are associated with increased aggregation and biofilm formation in the opportunistic pathogen P. aeruginosa. However, whether this phenomenon can be simply ascribed to the mechanical properties of the amyloid fibrils remains...
ORGANISM(S): Pseudomonas aeruginosa PAO1 
2014-10-17 | PXD001373 | Pride
Chronic infection Biofilms Cystic fibrosis Functional amyloids Pseudomonas aeruginosa pao1 Microbial proteomics 
ProteomicsProteomics analysis of Pseudomonas putida F1: From Early-Exponential to Late-Stationary
The genus Pseudomonas is a very versatile and heterogeneous group whose members regularly serve as model system of various applications. These include pathogens and rhizospheric strains as well as organisms with exceptional broad substrate ranges. Nevertheless, when it comes to physiological adaptat...
ORGANISM(S): Pseudomonas putida (strain F1 / ATCC 700007) 
2015-07-24 | PXD001219 | Pride
Growth Microbial proteomics Stationary Rpos Pseudomonas Exponential 
ProteomicsDirect identification of functional amyloid proteins in cell lysate by label-free quantitative mass spectrometry
Functional amyloids are important structural and functional components in many biofilm, yet our knowledge of these fascinating polymers is limited to a few examples for which the amyloid have been purified and characterized by mass spectrometry. Isolation of the functional amyloid from other cell co...
ORGANISM(S): Escherichia coli Pseudomonas sp. UK4 
2017-08-09 | PXD006835 | Pride
Nanomaterials Mass spectrometry Functional amyloids Biofilm 
ProteomicsMetaproteomics analyses of three chronically petroleum-polluted sites
Crude oil is the one of the most important natural assets of humankind, yet it is a major environmental pollutant, in particular, in marine environments. One of the largest crude oil polluted areas in the word is the semi-enclosed Mediterranean Sea, where the metabolic potential of indigenous popula...
ORGANISM(S): environmental samples 
2015-07-24 | PXD001490 | Pride
Marine Crude oil Hydrocarbon Microbiology Sediment Pollution Metaproteomics 
ProteomicsMajor Proteomic Changes Associated with Amyloid Induced Biofilm Formation in Pseudomonas aeruginosa PAO1
The newly identified functional amyloids in Pseudomonas (Fap) are associated with increased aggregation and biofilm formation in the opportunistic pathogen P. aeruginosa. However, whether this phenomenon can be simply ascribed to the mechanical properties of the amyloid fibrils remains...
ORGANISM(S): Pseudomonas Aeruginosa Pao1 (ncbitaxon:208964) 
MSV000082917 | MassIVE
UnknownTiming of surgery following SARS-CoV-2 infection: an international prospective cohort study.
Not available
S-EPMC8206995 | biostudies-literature
UnknownSARS-CoV-2 infection and venous thromboembolism after surgery: an international prospective cohort study.
Not available
S-EPMC8652887 | biostudies-literature
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