Hippocampus proteome

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Proteomics (290)
Unknown (160)
Genomics (13)
Transcriptomics (13)
Metabolomics (2)
Other (1)

Organisms

Schizosaccharomyces pombe (255)
Oryza sativa Indica Group (255)
Sinorhizobium meliloti BL225C (255)
Sus scrofa domesticus (255)
Ostreococcus tauri (255)
Saccharomyces cerevisiae (255)
Staphylococcus aureus (255)
Rattus norvegicus (255)
Escherichia coli (255)
Candida albicans (255)
Cyanophora paradoxa (255)
Entamoeba histolytica (255)
Physcomitrium patens (255)
Methylohalobius crimeensis 10Ki (255)
Homo sapiens (255)
Lotus japonicus (255)
Marchantia polymorpha (255)
Shigella flexneri (255)
Ctenopharyngodon idella (255)
Danio rerio (255)
Allexis (255)
Shigella (255)
Pseudomonas putida KT2440 (255)
Helicobacter pylori 26695 (255)
Streptococcus dysgalactiae subsp. equisimilis SK1249 (255)
Zea mays (255)
Mus musculus (28)
Rattus norvegicus (2)
Homo sapiens (1)
cellular organisms (1)

Organisms

Mus musculus (9)
Rattus norvegicus (1)

Repository

pride (255)
MassIVE (15)
iProX (13)
ENA (11)
geo (9)
biostudies-arrayexpress (5)
jPOST (5)
ExpressionAtlas (2)
MetaboLights (2)
PeptideAtlas (2)

Tissue

Brain (202)
Hippocampus (43)
Cell culture (12)
Hippocampal neuron (8)
Blood plasma (6)
Layer of hippocampus (5)
Hippocampal formation (4)
Neuron (4)
Liver (4)
Cerebral cortex (3)
Glial cell (3)
Microglial cell (3)
Kidney (3)
Cerebellum (2)
Frontal cortex (2)
Hippocampus (hippocampal formation) (2)
Neural tissue (2)
Astrocyte of the cerebral cortex (2)
Neuron of cerebral cortex (2)
Pyramidal neuron (2)
Neutrophil (2)
Astrocyte (2)
Permanent cell line cell (2)
Electrically active cell (2)
Lung (2)
Testis (2)
Retina (2)
Heart (2)
Spleen (2)
Cortex (1)

Disease

Alzheimer's disease (28)
Disease free (4)
Alzheimer's disease 1 (3)
Autism spectrum disorder (3)
Acute stress disorder (2)
Post-traumatic stress disorder (2)
Huntington Disease (2)
Parkinson's disease (2)
Mixed disorder as reaction to stress (2)
Amyotrophic lateral sclerosis type 6 (1)
Hepatic encephalopathy (1)
Toxic encephalopathy (1)
Alzheimer's disease 4 (1)
Semantic dementia (1)
Generalized convulsive epilepsy (1)
Status epilepticus (1)
Vascular dementia (1)
Subjective cognitive decline (1)
Major depressive disorder (1)
Alzheimer's disease 3 (1)
Epilepsy with generalized tonic-clonic seizures (1)
Progressive myoclonus epilepsy (1)
Syndromic intellectual disability (1)
Prion disease (1)
Cognitive disorder (1)
Multiple sclerosis (1)
Depression (1)
Brain ischemia (1)
Down syndrome (1)
Fragile X syndrome (1)

Technology Type

Mass Spectrometry (255)
Shotgun proteomics (145)
Bottom-up proteomics (50)
Data-dependent acquisition (31)
Affinity purification coupled with mass spectrometry proteomics (23)
SWATH MS (19)
Data-independent acquisition (15)
Gel-based experiment (13)
Top-down proteomics (6)
HDMSE (3)
MSE (2)
All-ion fragmentation (2)
SRM/MRM (2)
NMR spectroscopy (1)
Mass spectrometry (1)
DiaPASEF (1)

Instrument Platform

LTQ Orbitrap Velos (7)
Q Exactive (4)
1200 series LC/MSD SL (2)
Synapt MS (1)
LTQ Orbitrap Elite (1)
Orbitrap Exploris 480 (1)
Orbitrap Fusion (1)
LTQ Orbitrap (1)
Q Exactive HF (1)
Liquid Chromatography MS - Negative (LC-MS (Neg)) (1)
Liquid Chromatography MS - Positive (LC-MS (Pos)) (1)
Nuclear Magnetic Resonance (NMR) - (1)
Qtof-Premier (1)

Publication Date

2021 (41)
2022 (40)
2025 (38)
2026 (36)
2024 (35)
2019 (22)
2023 (19)
2020 (19)
2017 (13)
2018 (13)
2016 (9)
2014 (6)
2015 (4)
2008 (2)
2013 (1)
2007 (1)
2011 (1)

UNIPROT ID/AC

Q921C1 (2)
P03899 (2)
E9PXG1 (2)
Q9JKF6 (2)
Q99PU5 (2)
Q99JP6-2 (2)
Q8R191 (2)
Q8CHX7 (2)
Q8CA95-3 (2)
Q8C8N2 (2)
Q8BLE7 (2)
Q8BG39 (2)
Q80XD3 (2)
Q80U23 (2)
Q80T41 (2)
Q7TPM6 (2)
Q6XE40 (2)
Q60771 (2)
Q50DZ7 (2)
Q3V1R3 (2)
Q3UHJ2 (2)
Q3TZE2 (2)
Q3TYL3 (2)
Q3TXX4 (2)
Q1MXF8 (2)
P31650 (2)
P23242 (2)
O35316 (2)
M1VMU3 (2)
G3X9Y1 (2)

ENSEMBL ID

ENSMUSP00000141097 (2)
ENSMUSG00000072849 (1)
ENSMUSG00000098557 (1)

CHEBI ID

CHEBI:16870 (2)
CHEBI:30915 (2)
CHEBI:30769 (2)
CHEBI:132950 (1)
CHEBI:90008 (1)
CHEBI:136071 (1)
CHEBI:136086 (1)
CHEBI:86123 (1)
CHEBI:89446 (1)
CHEBI:15651 (1)
CHEBI:33984 (1)
CHEBI:28260 (1)
CHEBI:17790 (1)
CHEBI:30772 (1)
CHEBI:17164 (1)
CHEBI:16530 (1)
CHEBI:15646 (1)
CHEBI:18222 (1)
CHEBI:33942 (1)
CHEBI:22599 (1)
CHEBI:22660 (1)
CHEBI:26806 (1)
CHEBI:38083 (1)
CHEBI:22653 (1)
CHEBI:28300 (1)
CHEBI:26271 (1)
CHEBI:15366 (1)
CHEBI:16449 (1)
CHEBI:26986 (1)
CHEBI:24898 (1)

Metabolite Name

Tartrate (1)
3-phenylpropionate (1)
Sn-glycero-3-phosphocholine (1)
O-phosphocholine (1)
Urocanate (1)
Glycolate (1)
Butyrate (1)
Propionate (1)
Phosphatidylcholine (18:1/18:3) (1)
Stachyose (1)
Galactose (1)
Valerate (1)
LysoPC(18:1(9Z)) (1)
Formate (1)
Isobutyrate (1)
Fucose (1)
Methanol (1)
Uracil (1)
5-aminovalerate (1)
4-hydroxyphenylacetate (1)
3-hydroxyphenylacetate (1)
2-oxoglutarate (1)
Alpha-ketoisovalerate (1)
Acetate (1)
Nicotinate (1)
Uridine (1)
Xanthine (1)
Hypoxanthine (1)
Choline (1)
Malonate (1)

First Public Date

2026 (3)
2022 (2)
2025 (1)
2024 (1)
2023 (1)
2021 (1)
2015 (1)
2014 (1)

Modification

Not available (2)
79.966331 (1)
-17.026549 (1)
15.994915 (1)
57.021464 (1)
4-tetrahydrothiazine-3-carboxylic acid (1)

Study type

Transcription profiling by array (3)
RNA-seq of coding RNA (2)

Release Date

2021 (23)
2024 (18)
2023 (18)
2025 (16)
2022 (16)
2019 (13)
2016 (8)
2020 (7)
2015 (6)
2018 (6)
2017 (6)
2014 (6)
2013 (4)
2008 (4)
2012 (4)
2010 (4)
2007 (1)
2026 (1)
2011 (1)
2009 (1)
2004 (1)
2003 (1)

Lab affiliation

Department of Animal and Poultry Sciences and the School of Neuroscience, Virginia Tech, Blacksburg, VA, USA (12)
Research Unit for Molecular Medicine, Department of clinical Medicine, Aarhus University, Aarhus, Denmark (5)
Associate Professor, School of Animal Sciences Core Faculty, School of Neuroscience Faculty of Health Sciences Vice Chair, Institutional Biosafety Committee (IBC) Virginia Tech (2)
Key Laboratory of Modern Toxicology of Shenzhen, Shenzhen Center for Disease Control and Prevention, No. 8, Longyuan Road, Nanshan District, Shenzhen, China 518055. (2)
Molecular Neuroscience Research Center, Shiga University of Medical Science, Japan (2)
Group Leader, Quattrocolo Lab, Kavli Institute for Systems Neuroscience and Centre for Neural Computation, Norwegian University of Science and Technology (NTNU), Trondheim 7491, Norway (2)
Molecular Physiology of the Synapse Laboratory Institut de Recerca Sant Pau (IR Sant Pau) C/Sant Quintí, 77-79 08041 Barcelona Spain (2)
Ottawa Institute of Systems Biology and Department of Biochemistry, Microbiology and Immunology, Faculty of Medicine, University of Ottawa, Ottawa, Ontario, Canada (2)
The Drug Discovery Lab, Mary S. Easton Center for Alzheimer’s Disease Research, Department of Neurology, David Geffen School of Medicine, 710 Westwood Plaza, University of California Los Angeles, Los Angeles, CA 90095, USA (2)
National Key Laboratory of Medical Molecular Biology & Department of Immunology, Institute of Basic Medical Sciences, Chinese Academy of Medical Sciences, 5 Dong Dan San Tiao, Dongcheng District, Beijing 100005, China. (2)
Beijing Municipal Key Laboratory of Child Development and Nutriomics, Capital Institute of Pediatrics, Beijing, China (2)
CECAD Excellence Center, University of Cologne, Germany, D-50931 Center for Physiology and Pathophysiology, Faculty of Medicine and University Hospital Cologne, University of Cologne, Germany, D-50931 (2)
Department of Molecular and Cellular Neurobiology, Center for Neurogenomics and Cognitive Research, Amsterdam Neuroscience, Vrije Universiteit Amsterdam, Amsterdam, The Netherlands (2)
Department of Biochemistry and Molecular Biology, University of Southern Denmark, Odense, Denmark (2)
College of Biology, Hunan University, China (2)
Department of Translational Research in Psychiatry Max Planck Institute of Psychiatry, Munich (2)
Department of Biochemistry, Albert Einstein College of Medicine, Bronx, NY 10461, United States (2)
Department of Molecular and Cellular Neurobiology, Center for Neurogenomics and Cognitive Research, Amsterdam Neuroscience, VU Amsterdam, Amsterdam, The Netherlands (2)
Center for Diagbostik, Institute of Neuropathology, University Medical Center Hamburg Eppendorf, Germany (1)
State Key Laboratory of Quality Research in Chinese Medicine and Institute of Chinese Medical Sciences, University of Macau, Macau 999078 (1)
Key Laboratory of Modern Toxicology of Shenzhen, Shenzhen Center for Disease Control and Prevention, No. 8, Longyuan Road, Nanshan District, Shenzhen, 518055, China. Tel: +86 75525601914, Fax: +86 75525508584 (1)
Key Laboratory of Modern Toxicology of Shenzhen, Shenzhen Center for Disease Control and Prevention, Shenzhen 518055, China. (1)
College of Pharmacy, Ewha Womans University, Seoul, Korea (1)
Proteomics Unit, Center for Genomic Regulation, Barcelona Institute of Science and Technology, 08003 Barcelona. Proteomics Unit, Universitat Pompeu Fabra, 08003 Barcelona (1)
Washington University in St. Louis - School of Medicine Division of Endocrinology, Metabolism & Lipid Research (1)
Traumatic Brain Injury Research, Roskamp Institute, Sarasota, FL, USA (1)
Department of Molecular Sciences, Faculty of Science and Engineering, Macquarie University, Sydney, NSW, Australia (1)
Roskamp Institute, Neurodegenerative Disease and Proteomics Lab, Sarasota, FL (1)
Xi’an Children’s Hospital (The Affiliated Children’s Hospital of Xi’an Jiaotong University) (1)
State Key Laboratory of Quality Research in Chinese Medicine and Institute of Chinese Medical Sciences, University of Macau, Macau (1)

Tags

xref:PubMed:34111943 (1)
xref:PubMed:38992696 (1)
xref:PubMed:40328756 (1)
xref:PubMed:36894627 (1)
xref:PubMed:18283665 (1)
xref:PubMed:26102285 (1)
xref:EuropePMC:PMC10135431 (1)

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Effects of Platycodins Folium on Depression in Mice Based on a UPLC-Q/TOF-MS Serum Assay and Hippocampus Metabolomics

Major depressive disorder (MDD), also known as depression, is a state characterized by low mood and aversion to activity. Platycodins Folium (PF) is the dried leaf of Platycodon grandiflorum, with anti-inflammatory and antioxidative activities. Our previous research suggested that PF was rich in fla...

2020-06-03 | MTBLS952 | MetaboLights

Transcription profiling and proteomic profiling of mouse hippocampus

We have correlated transciptomics, proteomics and toponomics analyses of hippocampus tissue of inbred C57/BL6 mice to analyse the interrelationship of expressed genes and proteins at different levels of organization. We find that transcriptome and proteome levels of function are highly conserved bet...

ORGANISM(S): Mus musculus

2008-06-19 | E-GEOD-8239 | biostudies-arrayexpress

TMT-labeled quantitative protein profiling of hippocampus during human aging

Human hippocampus is one of the critical brain regions affected by aging. However, a fully understanding of aging-related changes in protein profiles in human hippocampus has not been well described, especially for the Chinese population. With the newly founded human brain bank in Chinese Academy of...

ORGANISM(S): Homo Sapiens (ncbitaxon:9606)

2017-03-28 | MSV000080710 | MassIVE

Mouse_Hippocampus_LCMSMS_IEF_Pooling

Protein extract from a single mouse hippocampus was enzymatically digested and fractionated by isoelectric focusing. Aliquots of fractions were pooled to make fewer, more complex samples. The unfractionated lysate, fractions, and pooled fractions were subjected to liquid chromatographyâ??mass spectr...

ORGANISM(S): Mus Musculus (ncbitaxon:10090)

2020-02-21 | MSV000084999 | MassIVE

In-depth protein profiling of mouse hippocampal postsynaptic density using data-independent acquisition proteomics

In the present study, we catalogued the proteome of postsynaptic density (PSD) derived from the hippocampus of three-week old (P19) mice. samples in 100 min gradient time.

ORGANISM(S): Mus Musculus (ncbitaxon:10090)

2019-08-27 | MSV000084240 | MassIVE

Protein degradation targets in hippocampus of the aged brain following context exposure

ORGANISM(S): Rattus norvegicus (Rat)

2024-08-01 | PXD051644 | Pride

Integrative transcriptome profiling of cognitive aging and its preservation through Ser/Thr protein phosphatase regulation

Environmental enrichment has been reported to delay or restore age-related cognitive deficits, however, a mechanism to account for the cause and progression of normal cognitive decline and its preservation by environmental enrichment is lacking. Using genome-wide SAGE-Seq, we provide a global assess...

ORGANISM(S): Mus musculus

2015-06-24 | E-GEOD-43718 | biostudies-arrayexpress

K63 polyubiquitin targets in the hippocampus across the lifespan

ORGANISM(S): Rattus norvegicus (Rat)

2025-06-18 | PXD058248 | Pride

Hippocampus K63 Memory Ubiquitin Aging

Estradiol replacement modulates synaptic transmission-related proteins in the hippocampus of ovariectomized rats: an exploratory proteomic approach

Background: The loss of ovarian-derived hormones that characterizes postmenopause influences cognition, emotion and energy homeostasis, processes integrated by the hippocampus. The cellular and molecular mechanisms by which estradiol influences this brain system have not been fully understood. The p...

ORGANISM(S): Rattus norvegicus (Rat)

2026-09-14 | PXD040816 | Pride

Synapse Postmenopause Glutamatergic synapse Mitochondrial dysfunction Vesicle-mediated transport Hormone therapy

Hippocampus proteome Mus musculus

To describe the protein profile in hippocampus, colon and ileum tissue’ changing after the old faeces transplants, we adopted a quantitative label free proteomics approach.

ORGANISM(S): Mus musculus (Mouse)

2021-09-09 | PXD016432 | Pride

Hippocampus proteome

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