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UnknownHXMS: a standardized file format for HX/MS data.
Not available
S-EPMC12632962 | biostudies-literature
UnknownExMS: data analysis for HX-MS experiments.
Not available
S-EPMC3398505 | biostudies-literature
ProteomicsThe HisRS-like domain of GCN2 is a pseudoenzyme that can bind uncharged tRNA - HX-MS Data
GCN2 is a stress response kinase that phosphorylates the translation initiation factor eIF2to inhibit general protein synthesis when activated by uncharged tRNA and stalled ribosomes. The presence of a HisRS-like domain in GCN2, normally associated with the ability to bind and aminoacylate tRNAs, le...
ORGANISM(S): Homo sapiens (Human) 
2024-02-01 | PXD049090 | Pride
Hdx-ms 
ProteomicsPIGEON-FEATHER datasets, extracting site-resolved energetic information from HX/MS experiments
We present PIGEON-FEATHER, a method for calculating free energies of opening (∆Gop) at single- or near-single-amino acid resolution for protein ensembles of all sizes from hydrogen exchange/mass spectrometry (HX/MS) data. PIGEON-FEATHER disambiguates and reconstructs all experimentally measured isot...
ORGANISM(S): Escherichia coli 
2024-11-05 | PXD057539 | Pride
Ecdhfr Hdhfr Laci Hx/ms 
ProteomicsPIGEON-FEATHER datasets, extracting site-resolved energetic information from HX/MS experiments
We present PIGEON-FEATHER, a method for calculating free energies of opening (∆Gop) at single- or near-single-amino acid resolution for protein ensembles of all sizes from hydrogen exchange/mass spectrometry (HX/MS) data. PIGEON-FEATHER disambiguates and reconstructs all experimentally measured isot...
ORGANISM(S): Escherichia coli 
2024-08-06 | PXD054550 | Pride
Ecdhfr Hdhfr Laci Hx/ms 
UnknownChasing Tails: Cathepsin-L Improves Structural Analysis of Histones by HX-MS.
Not available
S-EPMC6773551 | biostudies-literature
ProteomicsImproving spectral validation rates in hydrogen-deuterium exchange data analysis.
HX-MS data generated to support the testing and development of the HX data analysis applications in Mass Spec Studio.
ORGANISM(S): Homo sapiens (Human) Oryctolagus cuniculus (Rabbit) 
2021-02-22 | PXD022831 | Pride
Hx-deal Hdx-ms Mass-spec studio Proteasome Hx-pipe Eg5 
ProteomicsAutomating data analysis for hydrogen/deuterium exchange mass spectrometry using data-independent acquisition methodology
We developed an HX-MS2 strategy that supports the acquisition of CID-generated fragment ions alongside their peptide precursors. The approach enables true auto-validation of HX data by mining the rich set of deuterated fragments, using the extra dimension of data to simultaneously confirm the peptid...
ORGANISM(S): Homo sapiens (Human) Oryctolagus cuniculus (Rabbit) 
2023-09-08 | PXD045012 | Pride
Dia Lc-ms Swath-ms Dna-pk Hx-ms 
UnknownDual protease type XIII/pepsin digestion offers superior resolution and overlap for the analysis of histone tails by HX-MS.
Not available
S-EPMC7384951 | biostudies-literature
UnknownNovel Allosteric Pathway of Eg5 Regulation Identified through Multivariate Statistical Analysis of Hydrogen-Exchange Mass Spectrometry (HX-MS) Ligand Screening Data.
Not available
S-EPMC5341003 | biostudies-literature
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