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ProteomicsProteomic Analysis of Lyme Disease: Global Protein Comparison of Three Strains of Borrelia Burgdorferi
We report the proteomic analysis of the archetype B. burgdorferi B31 strain and two other strains (ND40, and JD-1) having different Borrelia pathotypes using strong cation exchange fractionation of proteolytic peptides followed by high-resolution, reversed phase capillary liquid chromatography coupl...
ORGANISM(S): Borreliella Burgdorferi (ncbitaxon:139) 
2020-05-29 | MSV000085503 | MassIVE
ProteomicsPhosphoproteomic Response of Cardiac Endothelial Cells to Ischemic Injury and Ultrasound
Global and phosphoproteomic data from mouse primary cardiac endothelial cells treated with oxygen deprivation and/or ultrasound. Samples were digested with trypsin, then analyzed by LC-MS/MS. Data was searched with MS-GF+ using PNNL's DMS processing pipeline.
ORGANISM(S): Mus Musculus (ncbitaxon:10090) 
2020-12-31 | MSV000086652 | MassIVE
ProteomicsProteomic profiling of intra-islet features reveals substructure-specific protein signatures
LCM-coupled nanoPOTS proteomics using FAIMS of intra-islet microstructures. 5 acinar samples, 5 whole islets, 5 islet interface vasculature pools, 5 islet inner microvasculature pools, 3 islets after microsvasculature removed.
ORGANISM(S): Rattus Norvegicus (ncbitaxon:10116) 
2022-01-25 | MSV000088730 | MassIVE
ProteomicsMouse brain proteome response to a circadian rhythm disruption and FABP7 KO
Proteomic data from mouse brain; frontal cortical/hippocampal, encompassing Sham control and Fabp7 KO combined with circadian rhythm disrupting electroshock. 16 total samples. Samples were digested with trypsin, TMT labeled and fractionated (12) then analyzed by LC-MS/MS. Data was searched with MS-G...
ORGANISM(S): Mus Musculus (ncbitaxon:10090) 
2025-02-21 | MSV000097187 | MassIVE
UnknownDok-1 negatively regulates platelet integrin αIIbβ3 outside-in signalling and inhibits thrombosis in mice.
Not available
S-EPMC4854776 | biostudies-literature
ProteomicsCrystalline cellulose hydrolysis in microbial communities via actinobacterial glycoside hydrolase family 12
Proteomic data from supernatants from thermophilic cellulolytic microbial communities, for the identification of specific hydrolases from Thermobispora bispora related actinobacterium.
ORGANISM(S): environmental samples 
2016-08-25 | PXD004204 | Pride
Proteomics Metaproteome Hydrolases Actinobacterium 
ProteomicsProteomic assessment of serum biomarkers of longevity in older men
We utilized a high throughput discovery-based proteomics platform to identify serum peptides and proteins that were associated with the attainment of longevity in a longitudinal study of community-dwelling men age 65 years or older. Baseline serum in 1196 men were analyzed using liquid chromatograph...
ORGANISM(S): Homo Sapiens (ncbitaxon:9606) 
2020-06-19 | MSV000085611 | MassIVE
ProteomicsProteomics of human peripheral blood mononuclear cells under normal circadian cycle and under a simulated night shift
Proteomic data from human peripheral blood mononuclear cells (PBMCs). Samples taken over a 24 hour constant light and diet following 3 days of normal day shift cycle or a night shift - circadian misaligned schedule where sleep and wake cycles were reversed. Time points (in clock time) 1, 7, 14, 21 h...
ORGANISM(S): Homo Sapiens (ncbitaxon:9606) 
2023-10-05 | MSV000093054 | MassIVE
ProteomicsSurfactant-assisted one-pot sample preparation for label-free single-cell proteomics
Large numbers of cells are generally required for quantitative global proteome profiling due to the significant surface adsorption losses associated with sample processing. Such bulk measurement obscures important cell-to-cell variability (cell heterogeneity) and makes proteomic profiling impossible...
ORGANISM(S): Homo Sapiens 
2021-03-11 | PXD022827 | panorama
TranscriptomicsSCL006,icSARS CoV Urbani or icSARS Bat SRBD (spike receptor binding domain from the wild type strain Urbani to allow for infection of human and non-human primate cells) infections of the 2B4 clonal derivative of Calu-3 cells - Time course
Purpose of experiment was to compare transcriptomics of 2B4 cells (clonal derivative of Calu-3 cells) infected with either icSARS CoV or the icSARS deltaORF6 mutant. Calu-3 cells were infected with either icSARS CoV or the cSARS Bat SRBD strain at MOI of 1.0. Cells samples were collected at 0, 7, 1...
ORGANISM(S): Homo sapiens 
2012-05-06 | E-GEOD-37827 | biostudies-arrayexpress
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