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Unknown (6974)
Proteomics (223)
Transcriptomics (126)
Genomics (107)
Metabolomics (51)
Models (2)
Genomic (1)
Multiomics (1)

Organisms

Homo sapiens (172)
Mus musculus (59)
Rattus norvegicus (7)
Schizosaccharomyces pombe (5)
Gluconobacter oxydans 621H (4)
Saccharomyces cerevisiae (3)
Gallus gallus (3)
Coturnix japonica (2)
Anas platyrhynchos (2)
Canis lupus familiaris (2)
Arabidopsis thaliana (2)
Drosophila melanogaster (2)
Murinae (1)
Salmonella enterica subsp. enterica serovar Paratyphi A (1)
Caldicellulosiruptor saccharolyticus (1)
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Ectocarpus siliculosus (1)
Xenopus laevis (1)
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Oncorhynchus mykiss (1)
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Glycine max (1)
Triticum aestivum (1)
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Acidobacteriaceae bacterium A2-4c (1)
Dialister invisus (1)
Acetonema longum DSM 6540 (1)
Megasphaera cerevisiae DSM 20462 (1)
Schwartzia succinivorans DSM 10502 (1)

Repository

biostudies-arrayexpress (151)
pride (109)
EGA (84)
iProX (49)
MassIVE (49)
MetaboLights (48)
PeptideAtlas (7)
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BioModels (2)
PAXDB (2)
dbGaP (1)
jPOST (1)

Tissue

Cell culture (17)
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Disease

Disease free (4)
Colon cancer (4)
Lung cancer (3)
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Prostate adenocarcinoma (2)
Bladder transitional cell carcinoma (2)
Locally advanced rectal cancer (1)
Colon carcinoma (1)
Bone sarcoma (1)
Colorectal carcinoma (1)
Synovial sarcoma (1)
Embryonal rhabdomyosarcoma (1)
Renal Wilms' tumor (1)
Uveal melanoma (1)
Peripheral primitive neuroectodermal tumor (1)
Glaucoma (1)
Fibrosarcoma (1)
Head and neck cancer (1)
Coronavirus infectious disease (1)
Malignant mesothelioma (1)
Chronic bronchitis (1)
Stomach cancer (1)
T-cell leukemia (1)
Chronic obstructive pulmonary disease (1)
Squamous cell carcinoma (1)
Mucinous adenocarcinoma (1)
Colon mucinous adenocarcinoma (1)
Salivary gland carcinoma (1)
Esophageal carcinoma (1)
Childhood extraosseous osteosarcoma (1)

Technology Type

Mass Spectrometry (109)
Shotgun proteomics (52)
Mass spectrometry (39)
Bottom-up proteomics (30)
Affinity purification coupled with mass spectrometry proteomics (14)
Data-dependent acquisition (13)
Gel-based experiment (7)
Chemical cross-linking coupled with mass spectrometry proteomics (7)
Illumina HiSeq 2000 (4)
NMR spectroscopy (4)
Mass spectrometry assay (4)
SWATH MS (3)
NMR spectroscopy assay (2)
Proteogenomics (2)
Data-independent acquisition (2)
Illumina HiSeq 2500, Illumina MiSeq, NextSeq 500, Illumina HiSeq 2000 (1)
Illumina 1.2M, Illumina 610K Quad, Affymetrix 6.0 (1)
Illumina HiSeq 2000, Illumina_2.5M (1)
Affinity proteomics (1)
Mass spectrometry imaging (1)
Immunopeptidomics (1)
Top-down proteomics (1)

Instrument Platform

LTQ Orbitrap Velos (16)
Liquid Chromatography MS - positive - reverse phase (13)
GC-MS (9)
Liquid Chromatography MS - negative - reverse phase (9)
Q Exactive (8)
GC MS (6)
Q Exactive Plus (5)
Orbitrap Exploris 480 (4)
Liquid Chromatography MS - Alternating (LC-MS (Alternating)) (4)
Liquid Chromatography MS - alternating - hilic (4)
Liquid Chromatography MS - positive - hilic (4)
Illumina NovaSeq 6000 (3)
Illumina HiSeq 2000 (3)
6510 Quadrupole Time-of-Flight LC/MS (3)
Orbitrap Fusion Lumos (3)
LTQ Orbitrap (3)
Liquid Chromatography MS - negative - hilic (3)
Illumina HiSeq 2500 (2)
TripleTOF 5600 (2)
Bruker (2)
Liquid Chromatography MS - Positive (LC-MS (Positive)) (2)
Illumina Genome Analyzier Iix (1)
HiSeq X Ten (1)
Agilent 8890 GC-MS (1)
Agilent 7890A GC with 5975C inert XL MSD (1)
TripleTOF 5600+ (1)
Orbitrap Elite mass spectrometer(Thermo) (1)
Q Exactive HF-X (1)
Q Exactive HF (1)
Orbitrap Eclipse (1)

Publication Date

2023 (39)
2022 (34)
2016 (29)
2014 (29)
2015 (28)
2020 (28)
2026 (25)
2021 (23)
2012 (22)
2024 (20)
2010 (19)
2025 (18)
2011 (15)
2017 (13)
2019 (12)
2018 (12)
2009 (12)
2013 (8)
2008 (8)
2007 (4)
2004 (1)

UNIPROT ID/AC

P07321 (1)
P14753 (1)
G1SVB3_RABIT (1)
A0A5F9C4L7_RABIT (1)
G1TKE5_RABIT (1)
G1T4D5_RABIT (1)
G1U8G0_RABIT (1)
G1SSN8_RABIT (1)
G1T4N8_RABIT (1)
G1SMH9_RABIT (1)
G1U2A1_RABIT (1)
G1U3Q6_RABIT (1)
A0A5F9CGP0_RABIT (1)
SAA2_RABIT (1)
G1T2S0_RABIT (1)
G1TDT3_RABIT (1)
CPNS1_RABIT (1)
G1T8H5_RABIT (1)
G1TL08_RABIT (1)
G1SZP6_RABIT (1)
A0A5F9CNA2_RABIT (1)
G1TKV1_RABIT (1)
G1TSW8_RABIT (1)
U3KM54_RABIT (1)
G1SDU8_RABIT (1)
G1SJQ2_RABIT (1)
A0A5F9D7S5_RABIT (1)
G1TEP2_RABIT (1)
G1U207_RABIT (1)
G1SPW1_RABIT (1)

ENSEMBL ID

ENSMUSG00000057465 (5)
ENSMUSG00000072849 (5)
ENSMUSP00000141097 (3)
ENSMUSP00000141542 (2)
ENSMUSG00000098557 (2)
ENSMUSG00000029711 (1)
ENSMUSG00000006235 (1)
ENSMUSG00000098814 (1)
ENSMUSG00000096833 (1)
ENSMUSG00000094930 (1)
ENSMUSG00000094652 (1)
ENSMUSG00000094546 (1)
ENSMUSG00000076695 (1)
ENSMUSG00000076591 (1)
ENSMUSG00000076586 (1)

CHEBI ID

CHEBI:17562 (16)
CHEBI:16919 (16)
CHEBI:15891 (16)
CHEBI:15354 (15)
CHEBI:16737 (15)
CHEBI:16708 (14)
CHEBI:16335 (14)
CHEBI:15428 (13)
CHEBI:24898 (13)
CHEBI:18132 (13)
CHEBI:28044 (13)
CHEBI:25017 (13)
CHEBI:17596 (13)
CHEBI:28300 (12)
CHEBI:16704 (12)
CHEBI:17568 (12)
CHEBI:18186 (12)
CHEBI:16811 (12)
CHEBI:17368 (12)
CHEBI:17154 (11)
CHEBI:30769 (11)
CHEBI:26271 (11)
CHEBI:29016 (11)
CHEBI:16449 (11)
CHEBI:16235 (11)
CHEBI:27570 (10)
CHEBI:18237 (10)
CHEBI:18211 (10)
CHEBI:30915 (10)
CHEBI:32816 (10)

Metabolite Name

Creatine (9)
Glycine (7)
Adenine (7)
Isoleucine (7)
Taurine (7)
AMP (7)
Cytidine (7)
Creatinine (6)
Glycerol (6)
Choline (6)
Citrate (6)
Valine (6)
Proline (6)
Glutamate (6)
Arginine (6)
Lysine (6)
Taurine (6)
Hypoxanthine (6)
Creatinine (6)
Guanine (6)
Choline (6)
Adenosine (6)
Tyrosine (6)
Leucine (6)
Phenylalanine (6)
L-Serine (6)
Inosine (6)
Creatine (5)
Spermidine (5)
Succinate (5)

IsPrivate

False (2)

Modelling Approach

Ordinary differential equation model (2)

Study type

Transcription profiling by array (71)
RNA-seq of coding RNA (26)
ChIP-seq (18)
ChIP-chip by tiling array (5)
ChIP-chip by array (5)
Methylation profiling by high throughput sequencing (5)
Comparative genomic hybridization by array (4)
Other (3)
Methylation profiling by array (3)
Unknown experiment type (2)
Transcription profiling by tiling array (2)
Transcription profiling by RT-PCR (2)
Genotyping by array (1)
RNA-seq of total RNA (1)
RNA-seq of non coding RNA (1)

Release Date

2022 (810)
2021 (768)
2023 (706)
2025 (706)
2024 (615)
2020 (584)
2019 (458)
2018 (451)
2017 (353)
2015 (302)
2016 (288)
2014 (210)
2013 (173)
2012 (172)
2011 (126)
2026 (96)
2010 (92)
2009 (87)
2008 (48)
2007 (33)
2006 (12)
2005 (10)
2004 (9)
1998 (6)
2002 (4)
2003 (2)
2001 (2)
2000 (2)

Lab affiliation

Univeristy of Georgia (5)
Imperial College London (5)
IBCII, Goethe University Frankfurt, Germany, Medical School (3)
Department of Biochemistry, Albert Einstein College of Medicine, Bronx, NY 10461, United States (3)
Center for Stem Cell Biology and Tissue Engineering, Key Laboratory for Stem Cells and Tissue Engineering, Ministry of Education, Sun Yat-sen University, Guangzhou, Guangdong, China. (2)
Professor in Microbiology and Biochemistry School of Biomolecular and Biomedical Science https://www.ucd.ie/sbbs/ BiOrbic https://biorbic.com UCD O'Brien Centre for Science 4th Floor, room E4.09 University College Dublin Belfield D4, Ireland (2)
The University of Melbourne (2)
Manchester Cell-Matrix Centre, Division of Molecular and Cellular Function, FBMH, University of Manchester (1)
Eppley Institute University of Nebraska Medical Center Omaha, Nebraska, USA (1)
University of Maryland, Baltimore, Center for Vaccine Development and Global Health, Malaria Research Program (1)
UCSF Medical Center (1)
1Wellcome Centre for Cell Biology, School of Biological Sciences, University of Edinburgh 2Chair of Bioanalytics, Institute of Biotechnology, Technische Universität Berlin, Berlin, 13355, Germany (1)
Department of Cellular and Molecular Medicine, University of Ottawa, Ottawa, ON, Canada. (1)
Department of Cellular and Molecular Medicine, Faculty of Medicine, University of Ottawa, Ottawa, Ontario, Canada. (1)
IUSM Center for Proteome Analysis, Department of Biochemistry and Molecular Biology, Indiana University School of Medicine, Indianapolis, IN (1)
Fudan University Shanghai Cancer Center from China (1)
Medical Proteome Center, Ruhr-University Bochum, Bochum, Germany (1)
Molecular Nutrition, Technische Universität München, Gregor-Mendel-Str. 2, 85354 Freising, Germany (1)
Eppley Institute University of Nebraska Medical School USA (1)
Human Immunological Diseases Section, Laboratory of Clinical Immunology and Microbiology, Division of Intramural Research, NIAID, NIH, Department of Health and Human Services, Unites States Government (1)
Epigenetic Memory - London Institute of Medical Sciences (1)
A*STAR-SRIS (1)
Molecular, Cellular, and Biomedical Sciences, University of New Hampshire, NH, USA (1)
Dana Farber Cancer Institute Harvard Medical School Boston, Ma (1)
CEITEC—Central European Institute of Technology, Masaryk University, Brno, Czech Republic (1)
State Key Laboratory of Membrane Biology, Institute of Zoology, Chinese Academy of Sciences (1)
Department of Animal Sciences, Colorado State University (1)
Department of Ophthalmology School of Medicine Oregon Health & Science University Portland, OR 97239 USA (1)
Professor, Gilula Chair in Chemical Biology, The Department of Chemistry, Skaggs Institute for Chemical Biology, The Scripps Research Institute 10550 North Torrey Pines Rd, La Jolla, CA 92037 (1)
J. Craig Venter Institute, Rockville MD 20850 USA (1)

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Sustained expression of cyclin D1 or cyclin D1/KE in mouse mammary gland

Analysis of mammary glands from tet-inducible(rtTA) transgenic mice expressing cyclin D1 using Affymetrix Mouse Gene 1.0 ST GeneChip arrays. MMTV-rtTA transgenic mice (MMTV-Mouse Mammary Tumor Virus promoter) were cross-mated to cyclin D1 transgenic mice under control of tet operon. 8-week-old tetr...

ORGANISM(S): Mus musculus

2013-12-31 | E-GEOD-43216 | biostudies-arrayexpress

Validation of Neurologic Impairment Diagnosis Codes as Signifying Documented Functional Impairment in Hospitalized Children.

Not available

S-EPMC8786975 | biostudies-literature

Dichlorvos-induced formation of isopeptide crosslinks between proteins in SH-SY5Y cells

Chlorpyrifos oxon catalyzes the crosslinking of proteins via an isopeptide bond between lysine and glutamic acid or aspartic acid in studies with purified proteins. Our goal was to determine the crosslinking activity of the organophosphorus pesticide, dichlorvos. We developed a protocol for examini...

ORGANISM(S): Homo sapiens (Human)

2023-10-24 | PXD033593 | Pride