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TranscriptomicsA two-component regulatory system controls serpin expression in Bifidobacterium breve UCC2003.
This work reports on the identification and molecular characterization of a two-component regulatory system (2CRS), encoded by serRK, which is believed to control the expression of the ser2003 locus in Bifidobacterium breve UCC2003. The ser2003 locus consists of two genes, Bbr_1319 (sagA) and Bbr_13...
ORGANISM(S): Bifidobacterium breve UCC2003 
2012-08-28 | E-GEOD-37835 | biostudies-arrayexpress
TranscriptomicsA conserved two-component signal transduction system controls the response to phosphate starvation in Bifidobacterium breve UCC2003
This work reports on the identification and molecular characterization of a two-component regulatory system (2CRS), encoded by phoRP in Bifidobacterium breve UCC2003, which controls the response to phosphate (Pi) starvation. The response regulator PhoP was shown to bind to the promoter region of pst...
ORGANISM(S): Bifidobacterium breve UCC2003 
2012-09-06 | E-GEOD-34983 | biostudies-arrayexpress
UnknownCancer-Selective Treatment of Cancerous and Non-Cancerous Human Cervical Cell Models by a Non-Thermally Operated Electrosurgical Argon Plasma Device.
Not available
S-EPMC7226384 | biostudies-literature
ProteomicsProbing the trypanosome nuclear pore by TurboID proximity labelling – Part3
Previous BioID experiments targeting the nucleoporin (NUP) NUP158 (PMID: 36410438; PXD031245), as well as NUP110, NUP76, NUP96 (PMID: 39206942; PXD047268)and NUP75, transport factors MEX67 and Ran(PXD055934), indicated that proximity labelling delivers highly specific interactome data in the confine...
ORGANISM(S): Trypanosoma brucei 
2025-05-07 | PXD059554 | Pride
Turboid Proximity labeling Nuclear pore Trypanosoma brucei 
ProteomicsProximity labelling and cryomill affinity purification compared for Trypanosoma brucei proteins with unconfined, semi-confined and confined localisation
Identification of protein-protein interactions is a major contributor for understanding protein function and elucidating molecular and cellular mechanisms. Two strategies are currently popular for identification of protein interaction partners directly from the cellular environment. Affinity purific...
ORGANISM(S): Trypanosoma brucei 
2022-11-30 | PXD031245 | Pride
Cryomilling Affinity purification Proteome Bioid Interactome 
ProteomicsMagoh, Y14, eIF4AIII interactomes by TurboID proximity labelling provide no evidence for a canonical EJC in (almost) intron-less trypanosomatids
In metazoans, mRNA quality is tightly monitored from transcription to translation. A key role lies with the exon junction complex (EJC) that is placed upstream of the exon-exon junction after splicing. The EJC inner core is composed of Magoh, Y14, eIF4AIII and BTZ and the outer core of proteins invo...
ORGANISM(S): Trypanosoma brucei 
2024-03-25 | PXD050946 | Pride
Mrna metabolism Mrna export control Exon junction complex Trypanosoma brucei 
ProteomicsImmunoisolation of the trypanosome decapping enzyme ALPH1 delivers a potential subcomplex
Removal of mRNA 5’ caps primes transcripts for degradation and is central for regulating gene expression in eukaryotes. The canonical decapping enzyme DCP2 is stringently controlled by assembly into a dynamic multi-protein complex together with the 5´-3´exoribonuclease Xrn1. Kinetoplastida lack DCP2...
ORGANISM(S): Trypanosoma brucei 
2023-06-14 | PXD042322 | Pride
Xrna Mrna decay Apah-like phosphatase Alph1 Mrna decapping Trypanosoma Exoribonuclease 
ProteomicsA unique mRNA decapping complex in trypanosomes
Removal of mRNA 5’ caps primes transcripts for degradation and is central for regulating gene expression in eukaryotes. The canonical decapping enzyme DCP2 is stringently controlled by assembly into a dynamic multi-protein complex together with the 5´-3´exoribonuclease Xrn1. Kinetoplastida lack DCP2...
ORGANISM(S): Trypanosoma brucei 
2023-06-14 | PXD038550 | Pride
Xrna Mrna decay Apah-like phosphatase Alph1 Mrna decapping Trypanosoma Exoribonuclease 
UnknownThe Importance of Landscape Composition for Pest Control and Crop Yield: A Global Quantitative Synthesis.
Not available
S-EPMC12597024 | biostudies-literature
ProteomicsProbing the trypanosome nuclear pore by TurboID proximity labelling – Part2
Previous BioID experiments targeting the nucleoporin (NUP) NUP158 (PMID: 36410438; PXD031245), as well as NUP110, NUP76 and NUP96 (PMID: 39206942; PXD047268) indicated that proximity labelling delivers highly specific interactome data in the confined localisation of the nuclear pore, with a labellin...
ORGANISM(S): Trypanosoma brucei 
2024-09-20 | PXD055934 | Pride
Bioid Trypanosoma brucei Porin Nuclear transport Nuclear pore 
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