Li Junjie J - OmicsDI

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Proteomics (35)
Unknown (4)
Transcriptomics (3)
Multiomics (3)
Metabolomics (2)

Organisms

Mycobacterium tuberculosis SP7 (16)
Mycobacterium tuberculosis SP10 (16)
Mycobacterium tuberculosis SP13 (16)
Mycobacterium tuberculosis SP22 (16)
Chlamydomonas reinhardtii (16)
Enterococcus mundtii CRL35 (16)
Oncorhynchus tshawytscha (16)
Pseudomonas canadensis (16)
Pseudomonas aeruginosa PAO1H2O (16)
Human alphaherpesvirus 1 strain 17 (16)
Mycobacterium tuberculosis SP1 (16)
Marchantia polymorpha subsp. ruderalis (16)
Methylocystis sp. (16)
Exiguobacterium sp. SH31 (16)
Palaemonetes sp. common grass shrimp associated circular virus (16)
Amaranthus tricolor (16)
Spirochaeta sp. ELBA (16)
Clavibacter nebraskensis NCPPB 2581 (16)
Porites pukoensis (16)
Porphyromonas gingivalis (16)
Leishmania tarentolae (16)
Porphyromonas gingivalis W83 (16)
Homo sapiens (14)
Mus musculus (5)
Neofusicoccum parvum (1)
Human CSF-associated densovirus (1)
Clostridioides difficile ATCC 9689 = DSM 1296 (1)
Clostridioides difficile 70-100-2010 (1)
Oryza sativa (1)
Oryctolagus cuniculus (1)

Repository

iProX (16)
pride (16)
biostudies-arrayexpress (3)
PeptideAtlas (3)
MetaboLights (2)

Tissue

Permanent cell line cell (4)
Others (3)
HEK-293T cell (3)
Epithelial cell (3)
Cell culture (3)
Early embryonic cell (2)
Cholangiocarcinoma cell line (1)
MCF-10A cell (1)
Type B pancreatic cell (1)
Macrophage (1)
Blood plasma (1)
HeLa cell (1)
Kidney (1)

Disease

Disease free (4)
Type 2 diabetes mellitus (2)
Inflammation (1)
Cholangiocarcinoma (1)
Cervix carcinoma (1)

Technology Type

Mass Spectrometry (16)
Affinity purification coupled with mass spectrometry proteomics (9)
Shotgun proteomics (8)
Mass spectrometry (2)
Top-down proteomics (1)
Bottom-up proteomics (1)

Instrument Platform

LTQ Orbitrap Elite (2)
Liquid Chromatography MS - Negative (LC-MS (Negative)) (1)
Liquid Chromatography MS - Positive (LC-MS (Positive)) (1)
Gas Chromatography MS - Positive (GC-MS (Positive)) (1)
Liquid Chromatography MS - negative - reverse phase (1)
Liquid Chromatography MS - positive - reverse phase (1)
QExactive (1)

Publication Date

2022 (7)
2016 (4)
2025 (4)
2014 (4)
2024 (3)
2020 (3)
2017 (3)
2021 (2)
2019 (2)
2026 (1)
2018 (1)
2015 (1)

UNIPROT ID/AC

Q6ZVE7 (3)
Q99619 (3)
Q8N4U5 (3)
Q9UBZ4 (3)
Q96QP1 (3)
Q9Y576 (3)
Q6ZTQ3 (3)
Q9H633 (3)
Q96PC5-2 (3)
Q96PC5 (3)
Q8TDW5 (3)
Q9NXZ2 (3)
Q8IZP6 (3)
Q9UHA2 (3)
Q6MZQ0 (3)
Q9C019 (3)
Q96EP1 (3)
Q8IYM2 (3)
Q86SJ2 (3)
Q02833 (3)
O43194 (3)
Q9Y2C3 (3)
O00338 (3)
Q6NSJ2 (3)
Q17R98 (3)
Q9Y664 (3)
Q9UNP4 (3)
Q96BZ9 (3)
Q8WUA8 (3)
Q3MII6 (3)

ENSEMBL ID

ENSG00000247315 (3)
ENSG00000147251 (3)
ENSG00000170477 (3)

CHEBI ID

CHEBI:28903 (2)
CHEBI:10221 (2)
CHEBI:168226 (1)
CHEBI:187390 (1)
CHEBI:185326 (1)
CHEBI:192966 (1)
CHEBI:192965 (1)
CHEBI:134608 (1)
CHEBI:74057 (1)
CHEBI:186342 (1)
CHEBI:27648 (1)
CHEBI:192964 (1)
CHEBI:192963 (1)
CHEBI:183529 (1)
CHEBI:185673 (1)
CHEBI:191816 (1)
CHEBI:165484 (1)
CHEBI:192962 (1)
CHEBI:192961 (1)
CHEBI:192960 (1)
CHEBI:187304 (1)
CHEBI:192959 (1)
CHEBI:191433 (1)
CHEBI:192958 (1)
CHEBI:192957 (1)
CHEBI:168236 (1)
CHEBI:192956 (1)
CHEBI:192955 (1)
CHEBI:165327 (1)
CHEBI:192954 (1)

Metabolite Name

Copaene (2)
4-[5]-ladderane-butanoic acid (1)
Scutellarein 6,7,4'-trimethyl ether 5-(6'''-acetylglucosyl)(1->3)-galactoside (1)
4,4,14alpha-trimethyl-5alpha-cholest-9(11),24-dien-3beta-ol (1)
Ent-9-A1-PhytoP (1)
7,8-epoxy-17S-HDHA (1)
7,3',4'-Trihydroxy-5-methoxy-6-C-methylflavanone 7-O-glucoside (1)
3-Ketohexanoyl-CoA (1)
Quercetin 3-(2''-galloylgalactoside) (1)
Catechin 4'-O-beta-D-glucopyranoside (1)
Gibberellin A3 O-beta-D-glucoside (1)
Kenusanone D (1)
Transilitin (1)
6-{[2-({4,5-dihydroxy-6-methyl-2-[(3,4,5,6-tetrahydroxyoxan-2-yl)methoxy]oxan-3-yl}oxy)-3,5-dihydroxy-6-methyloxan-4-yl]oxy}-3,4,5-trihydroxyoxane-2-carboxylic acid (1)
9,10-dihydroxy-13-hydroperoxy-11-octadecenoic acid (1)
8,9-Epoxy-2Z-decene-4,6-diynoic acid (1)
Quercetin 3-gentiobioside-7-glucuronide (1)
Quercetin 4'-glucuronide (1)
Maritimetin 6-(6''-acetylglucoside) (1)
3,5,7,3',4'-Pentahydroxy-6-methoxyflavan 3-O-[glucopyranosyl-(4->1)-alpha-D-xylopyranoside] (1)
8-oxo-9,11-octadecadiynoic acid (1)
5,11-dodecadiynoic acid (1)
D17 PGE1 (1)
4Z,8Z,11Z-Heptadecatriene (1)
Luteolin 7-(6''-malonylneohesperidoside) (1)
(22E)-(24R)-24,25-dihydroxy-22,23-didehydrovitamin D3 (1)
14-F2-dihomo-IsoP (1)
3Z,6E,8E-Dodecatrien-1-ol (1)
Genistein 7,4'-bis(O-glucosylapioside) (1)
(9Z,11E)-12-((3S,5R)-5-((R)-1-hydroxypropyl)-1,2-dioxolan-3-yl)dodeca-9,11-dienoic acid (1)

Modification

71.037114 (3)
15.994915 (3)
57.021464 (3)

Study type

Comparative genomic hybridization by array (2)
Transcription profiling by array (1)

Release Date

2016 (3)
2023 (1)
2021 (1)
2019 (1)
2012 (1)

Lab affiliation

Experimental Radiation Oncology, MD Anderson Cancer Center, Houston, TX, USA (3)
Department of Experimental Radiation Oncology, The University of Texas MD Anderson Cancer Center (2)
Department of Experimental Radiation Oncology, The University of Texas MD Anderson Cancer Center, Houston, TX, USA (2)
THE INSTITUTE OF BIOPHYSICS, CAS (2)
Run Run Shaw Hospital, Zhejiang University School of Medicine (1)
Experimental Radiation Oncology, The University of Texas MD Anderson Cancer Center (1)
Experimental Radiation Oncology, The University of Texas, MD Anderson Cancer Center (1)
Institute of Marine Sciences and Guangdong Provincial Key Laboratory of Marine Biotechnology, Shantou University, Shantou 515063, China (1)
Department of Experimental Radiation Oncology, The University of Texas MD Anderson Cancer Center, Houston, TX 77030, USA (1)
MD Anderson Cancer Center (1)
School of Pharmaceutical Sciences, Wenzhou Medical University (1)

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Transcriptome and metabolome changes in Chinese cedar during cold acclimation reveal the roles of flavonoids in needle discoloration and cold resistance

Cryptomeria fortunei growth and development are usually affected by low temperatures. Despite the evergreen nature of this species, most needles turn yellowish-brown in cold winters. The underlying discoloration mechanisms that cause this phenomenon in response to cold acclimation remain...

2022-08-12 | MTBLS3184 | MetaboLights

Revealing the Impact of Micro-SiO₂ Filer Content on the Anti-Corrosion Performance of Water-Borne Epoxy Resin.

Not available

S-EPMC10422263 | biostudies-literature

FGF13 in septic lung injury: A regulator of the ERK/aerobic glycolysis axis in the inflammatory state

HEK293T cells were transfected with Flag-FGF13 plasmids, and cells were performed with immunoprecipitation by Flag antibody or IgG (CST, 3900, USA) with protein A/G beads (Meck, LSKMAGAG10, USA). Coimmunoprecipitation was carried out in HEK293T cells and visualized with silver staining by using the ...

ORGANISM(S): Homo sapiens (Human)

2025-12-17 | PXD057743 | Pride

Influence of ATM-mediated DNA damage response on genomic variation in human induced pluripotent stem cells (NimbleGen CNV)

Genome instability is a potential limitation to the research and therapeutic application of induced pluripotent stem cells (iPSCs). Observed genomic variations reflect the combined activities of DNA damage, cellular DNA damage response (DDR), and selection pressure in culture. To understand the cont...

ORGANISM(S): Homo sapiens

2016-03-29 | E-GEOD-78717 | biostudies-arrayexpress

Influence of ATM-mediated DNA damage response on genomic variation in human induced pluripotent stem cells (Affymetrix expression)

ORGANISM(S): Homo sapiens

2016-03-29 | E-GEOD-78716 | biostudies-arrayexpress

Influence of ATM-mediated DNA damage response on genomic variation in human induced pluripotent stem cells (Affymetrix CNV)

ORGANISM(S): Homo sapiens

2016-03-29 | E-GEOD-78715 | biostudies-arrayexpress

Human Transcription Factors LC-MSMS

How transcription factors (TFs), the ultimate targets and executors of cellular signalling pathways, are regulated via protein-protein interactions remains elusive. To systematically investigate the regulations and functions of human transcription factors, we performed proteomics studies of soluble ...

ORGANISM(S): Homo sapiens (Human)

2015-04-07 | PXD001383 | Pride

Altered Cellular White Matter But Not Extracellular Free Water on Diffusion MRI in Individuals at Clinical High Risk for Psychosis.

Not available

S-EPMC7142275 | biostudies-literature

Human Tankyrases TAP-LC-MSMS - Proteomic Analysis of the Human Tankyrase Protein Interaction Network Reveals Its Role in Pexophagy

Tankyrase 1 (TNKS1) and tankyrase 2 (TNKS2) belong to the poly(ADP-ribose) polymerase (PARP) family of proteins, which use NAD+ to modify substrate proteins with ADP-ribose modifications. Tankyrases are implicated involving in multiple cellular functions, including the telomere length control, Wnt/b...

ORGANISM(S): Homo sapiens (Human)

2017-07-24 | PXD004647 | Pride

Human Lc-msms Tankyrase Tap

Human CDK Family - Proteomic Analysis of the Human CDK Family Reveals a Novel CDK5 Complex Involved in Cell Growth and Migration

Cyclin-dependent kinases (Cdks) are the catalytic subunits of a family of mammalian heterodimeric serine/threonine kinases that play critical roles in control of cell-cycle progression, transcription and neuronal functions. To systematically investigate the regulations and functions of CDKs, we cond...

ORGANISM(S): Homo sapiens (Human)

2014-08-08 | PXD000593 | Pride

Human Lc-msms Cdk

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44 Results

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