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UnknownAnnotation of cell types (ACT): a convenient web server for cell type annotation.
Not available
S-EPMC10623726 | biostudies-literature
TranscriptomicsDynamic profile of gene expression in rice panicle under high temperature
To comprehend the profile of rice gene expression at reproductive stage under high temperature, Agilent 4M-CM-^W44k rice oligo microarray experiments were carried out using rice panicle of developmental stage 7-9 at 0min, 20min, 1hr, 2hr, 4hr, and 8hr after the treatment of 40 degree centigrade, and...
ORGANISM(S): Oryza sativa 
2012-11-28 | E-GEOD-38665 | biostudies-arrayexpress
ProteomicsIP-MS of SpvB and SopD2, four biological replicates in 18 LC-MS/MS experiments.
To screen the host targets of SpvB, we performed IP-MS analyses and measured four biological replicates of paired SpvB and SopD2 samples in 18 LC-MS/MS experiments.
ORGANISM(S): Homo Sapiens 
2023-07-25 | PXD044057 |
ProteomicsLegionella pneumophila effector LegK3 phosphorylates multiple caspases involved in apoptosis signaling
Legionella pneumophila effector Legk3 phosphorylates caspase3/7/9 under infection, transfection, or in vitro purification
ORGANISM(S): Homo Sapiens 
2024-07-20 | PXD054088 |
ProteomicsLegionella pneumophila effector LegK3 directly phosphorylates multiple caspases involved in apoptosis signaling, including Caspase-3, Caspase-7, and Caspase-9
Legionella pneumophila effector Legk3 phosphorylates caspase3/7/9 under infection, transfection, or in vitro purification condition
ORGANISM(S): Homo Sapiens 
2024-07-28 | PXD054358 |
UnknownIdentifying functions and prognostic biomarkers of network motifs marked by diverse chromatin states in human cell lines.
Not available
S-EPMC6962092 | biostudies-literature
ProteomicsMass spectrometry analysis of SlLhcb2
Mass spectrometry analysis of the ΔLhcb2 protein after a 2-hour incubation with GNAT2.
ORGANISM(S): Solanum lycopersicum 
2025-08-25 | PXD054007 | Pride
Tomato lhcb2 lc_ms 
ProteomicsShigella flexneri evades septin-mediated cell-autonomous immunity via protein ADP-riboxanation
We demonstrate that OspC effectors enable S. flexneri to evade septin cage entrapment. Mechanistically, OspC catalyzes ADP-riboxanation of SEPT9 at Arg561, a critical site essential for stabilizing septin hetero-oligomers. Notably, ADP-riboxanation or mutation of Arg561 impairs septin polymerization...
ORGANISM(S): Homo Sapiens 
2025-11-04 | PXD070327 |
ProteomicsDeubiquitinase OTULIN dampens RIG-I dependent type I IFN signaling by removing the linear ubiquitination from TRAF6
In this study, we observed a global increase in intracellular linear ubiquitination upon RNA viral infection, suggesting that linear ubiquitination may be a prerequisite for the initiation of antiviral innate immunity. Furthermore, using a combination of various cell lines and in vivo experiments, w...
ORGANISM(S): Homo Sapiens 
2025-11-15 | PXD070809 |
ProteomicsShigella induces stress granule formation by ADP-riboxanation of the eIF3 complex
We utilized a large-scale proteomic profiling strategy to quantitatively measure ADP-riboxanation (and classical ADP-ribosylation) levels of host proteins upon introduction of bacterial effectors. Notably, we identified the eukaryotic translation initiation factor 3 (eIF3) complex as a novel target ...
ORGANISM(S): Homo Sapiens 
2024-01-18 | PXD048666 |
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