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TranscriptomicsFemale human iPS cells retain an inactive X-chromosome
Comparison of human iPSC lines, ESC and fibroblasts to determine their expression patterns. All early passage female lines profiled expressed XIST RNA which is an indicator of an inactive X chromosome. Genes on the X-chromosome were also analyzed for overall levels of gene expression compared to h...
ORGANISM(S): Homo sapiens 
2010-08-18 | E-GEOD-22246 | biostudies-arrayexpress
TranscriptomicsTranscriptional profiling of bulge stem cells
In adult skin, each hair follicle contains a reservoir of stem cells (the bulge), which can be mobilized to regenerate the new follicle with each hair cycle and to reepithelialize epidermis during wound repair. Here we report new methods that permit their clonal analyses and engraftment and demonstr...
ORGANISM(S): Mus musculus 
2012-10-19 | E-GEOD-41704 | biostudies-arrayexpress
TranscriptomicsTranscription profiling of human late passage hiPSCs (pluripotent stem cells)
Detailed analysis comparing induced pluripotent stem cells revealed functional gene expression differences to hESCs that are changed with long term passaging. We used microarrays to detail the changes that are made throughout passaging to hiPSC lines. Experiment Overall Design: hiPSC lines were harv...
ORGANISM(S): Homo sapiens 
2009-07-19 | E-GEOD-16654 | biostudies-arrayexpress
ProteomicsIdentification of potential protein biomarkers associated with congenital diaphragmatic hernia in human amniotic fluid
Congenital diaphragmatic hernia (CDH) results from incomplete diaphragm development and can be associated with pulmonary hypoplasia, pulmonary hypertension, and heart failure. Currently, few biomarkers are available. Since amniotic fluid comprises proteins of both fetal and maternal origin, its anal...
ORGANISM(S): Homo sapiens (Human) 
2023-10-24 | PXD041165 | Pride
Surfactant protein b Osteopontin Galectin-3 Amniotic fluid Kallikrein-5 Proteomics 
TranscriptomicsTranscriptional responses of Mycobacterium tuberculosis to lung surfactant
This study uses microarray analyses to examine gene expression profiles for Mycobacterium tuberculosis (Mtb) induced by exposure in vitro to bovine lung surfactant preparations that vary in apoprotein content: (i) whole lung surfactant (WLS) containing the complete mix of endogenous lipids and surfa...
ORGANISM(S): Mycobacterium tuberculosis 
2010-05-18 | E-GEOD-14005 | biostudies-arrayexpress
UnknownAdverse childhood experiences and cognitive function in adulthood: examining the roles of depressive symptoms and inflammation in a prospective cohort study.
Not available
S-EPMC9244111 | biostudies-literature
ProteomicsThe mechanism of infochemicals induced colony formation and flocculation in the microalga Scenedesmus subspicatus
Daphnia infochemicals can induce defensive responses in microalgae Scenedesmus spp., including colony formation and flocculation. We investigated the phenomenon using a combination of microalgal biology, physiological ecology, and quantitative isobaric tagging (iTRAQ) proteomics. We have discovered ...
ORGANISM(S): Desmodesmus subspicatus 
2020-05-06 | PXD014153 | Pride
Daphnia infochemicals Scenedesmus Induced defences Colony formation itraq proteomics Flocculation Predation 
TranscriptomicsEpigenetic and transcriptional aberrations in human pluripotent stem cells reflect differences in reprogramming mechanisms [methylation array]
Human pluripotent stem cells hold great potential for regenerative medicine, but existing cell types have imitations. Human embryonic stem cells derived from fertilized embryos (IVF-ESCs) are considered the “gold standard”, but are allogeneic to potential recipients. Autologous induced pluripotent s...
ORGANISM(S): Homo sapiens 
2014-07-08 | E-GEOD-53060 | biostudies-arrayexpress
TranscriptomicsEpigenetic and transcriptional aberrations in human pluripotent stem cells reflect differences in reprogramming mechanisms [RNA-Seq]
Human pluripotent stem cells hold great potential for regenerative medicine, but available cell types have important limitations. While embryonic stem cells derived from fertilized embryos (IVF-ESCs) are considered the "gold standard" of pluripotency, they are allogeneic to potential recip...
ORGANISM(S): Homo sapiens 
2014-07-08 | E-GEOD-53094 | biostudies-arrayexpress
ProteomicsE.coli - Whole organism, SC (Arike,j_proteomics,2012)
abundance based on Spectral counting, Interaction consistency score: 19.3, Coverage: 49
ORGANISM(S): 511145 
2012-00-00 | 1411226067 | PAXDB
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