Membrane-enriched fraction

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Proteomics (247)
Transcriptomics (237)
Unknown (215)
Genomics (70)
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Other (3)

Organisms

Homo sapiens (111)
Mus musculus (85)
Caenorhabditis elegans (14)
Arabidopsis thaliana (12)
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Tetrahymena thermophila (1)
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Oryza sativa (1)
Rattus rattus (1)

Organisms

Mus musculus (4)
Arabidopsis thaliana (2)
Homo sapiens (2)
Arthrobacter sp. AZCC_0090 (1)
Trichoplusia ni (1)
Zea mays (1)
Danio rerio (1)

Repository

biostudies-arrayexpress (286)
pride (227)
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geo (5)
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Tissue

Cell culture (43)
Brain (25)
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Heart (13)
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Cell suspension culture (8)
Root (7)
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Prokaryotic cell (4)
Blood (4)
Mesenchymal cell (3)
Extracellular vesicle (3)
Primary cell (3)
Permanent cell line cell (3)
Blood cell (3)
Stem cell (3)
Lung (3)
Myoblast cell line (2)
Fat cell (2)
Gill (2)
Photosynthetic cell (2)
Shoot (2)
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Monocyte (2)
T cell (2)
Blood plasma (2)
Sperm (2)

Disease

Disease free (7)
Breast cancer (6)
Alzheimer's disease (6)
Normal (4)
Cardiovascular system disease (4)
Not Available (3)
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Cancer (2)
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Blumeria graminis hordei (powdery mildew) inoculation (1)
Colon Cancer (1)
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Infected (1)
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Mammary tumor (1)
Healthy donor tissue (1)
Buruli ulcer disease (1)
Uterine cancer (1)
Paraganglioma (1)
Lyme disease (1)
Cardiomyopathy (1)
Placenta disease (1)
Gonorrhea (1)
Idiopathic pulmonary fibrosis (1)
Bone osteosarcoma (1)
Non-alcoholic steatohepatitis (1)
Filariasis (1)

Technology Type

Mass Spectrometry (227)
Shotgun proteomics (141)
Bottom-up proteomics (31)
Affinity purification coupled with mass spectrometry proteomics (21)
Gel-based experiment (19)
Data-dependent acquisition (18)
SWATH MS (9)
Data-independent acquisition (8)
SRM/MRM (7)
Top-down proteomics (7)
Mass spectrometry (5)
Chemical cross-linking coupled with mass spectrometry proteomics (3)
All-ion fragmentation (2)
HDMSE (2)

Instrument Platform

Illumina NovaSeq 6000 (17)
Illumina HiSeq 2500 (10)
NextSeq 500 (9)
Axon GenePix 4000B scanning hardware (5)
Illumina MiSeq (5)
Axon GenePix 4000A scanning hardware (4)
Illumina HiSeq 4000 (4)
GenePix Professional 4200A [Axon Instruments] (3)
Illumina HiSeq 2000 (3)
Instrument (3)
Q Exactive (3)
Scanning hardware (2)
Illumina HiSeq 1000 (2)
Q Exactive HF (2)
Liquid Chromatography MS - alternating - hilic (2)
Liquid Chromatography MS - negative - reverse phase (2)
Chromium Controller with Chromium Next GEM Single Cell 5’ and V(D)J (kits v1.1) (1)
10X Genomics Chromium v3.1 with multiplexing kit (1)
Not applicable (1)
AB SOLiD 4 System (1)
Illumina Genome Analyzer IIx (1)
ScanArray Express HT [PerkinElmer] (1)
GenePix 4000B [Axon Instruments] (1)
Illumina Genome Analyzer II (1)
Ion Torrent Proton (1)
LCQ Deca XP Plus (1)
LTQ Orbitrap Velos (1)
LTQ Orbitrap (1)
Orbitrap Fusion Lumos (1)
Direct infusion MS - positive (1)

Publication Date

2015 (47)
2013 (44)
2022 (41)
2023 (38)
2021 (38)
2014 (33)
2026 (30)
2016 (25)
2008 (25)
2020 (22)
2019 (22)
2025 (21)
2010 (21)
2024 (19)
2018 (19)
2011 (18)
2017 (17)
2007 (13)
2012 (12)
2009 (12)
2006 (12)
2005 (9)
2004 (2)
2002 (2)

UNIPROT ID/AC

A0A0R4J7G5_BARHE (1)
A0A0H3LZT0_BARHE (1)
A0A0R4J7Q8_BARHE (1)
A0A0R4J938_BARHE (1)
A0A0H3M4F9_BARHE (1)
A0A0H3M1T5_BARHE (1)
A0A0H3M255_BARHE (1)
A0A0R4J7B3_BARHE (1)
A0A0R4J8M6_BARHE (1)
MURG_BARHE (1)
A0A0R4J718_BARHE (1)
A0A0H3LZY1_BARHE (1)
OBG_BARHE (1)
A0A0H3M6H9_BARHE (1)
A0A0H3LYG7_BARHE (1)
Q4L2V4_BARHE (1)
A0A0R4J989_BARHE (1)
A0A0R4J829_BARHE (1)
A0A0H3LY81_BARHE (1)
A0A0R4J8C4_BARHE (1)
RS6_BARHE (1)
A0A0H3M753_BARHE (1)
A0A0H3M3L2_BARHE (1)
A0A0H3LVZ3_BARHE (1)
A0A0H3M202_BARHE (1)
NDVA_BARHE (1)
DNAJ_BARHE (1)
EX7S_BARHE (1)
A0A0H3LYB6_BARHE (1)
A0A0H3LVU1_BARHE (1)

CHEBI ID

CHEBI:15351 (2)
CHEBI:18012 (2)
CHEBI:6650 (2)
CHEBI:30769 (2)
CHEBI:89151 (1)
CHEBI:141509 (1)
CHEBI:136122 (1)
CHEBI:167279 (1)
CHEBI:145313 (1)
CHEBI:136074 (1)
CHEBI:86174 (1)
CHEBI:134027 (1)
CHEBI:72531 (1)
CHEBI:72521 (1)
CHEBI:136266 (1)
CHEBI:89250 (1)
CHEBI:167280 (1)
CHEBI:86173 (1)
CHEBI:134574 (1)
CHEBI:137836 (1)
CHEBI:134572 (1)
CHEBI:89280 (1)
CHEBI:133229 (1)
CHEBI:136482 (1)
CHEBI:89415 (1)
CHEBI:134643 (1)
CHEBI:136474 (1)
CHEBI:86111 (1)
CHEBI:195297 (1)
CHEBI:195296 (1)

Metabolite Name

Acetyl-CoA (2)
Citrate (2)
PS 22:6-22:1 (1)
PS 20:4-20:0 (1)
PS 20:1-22:6 (1)
PS 20:0-22:6 (1)
PS 19:0-22:6 (1)
PS 18:2-18:1 (1)
PS 18:2-18:0 (1)
PS 18:1-24:5 (1)
PS 18:1-24:4 (1)
PS 18:1-24:1 (1)
PS 18:1-24:0 (1)
PS 18:1-23:0 (1)
PS 18:1-22:6 (1)
PS 18:1-22:1 (1)
PS 18:1-22:0 (1)
PS 18:1-20:4 (1)
PS 18:1-20:3 (1)
PS 18:1-20:1 (1)
PS 18:1-20:0 (1)
PS 18:1-18:1 (1)
PS 18:1-18:0 (1)
PS 18:0-24:6 (1)
PS 18:0-24:5 (1)
PS 18:0-24:4 (1)
PS 18:0-22:6 (1)
PS 18:0-22:4 (1)
PS 18:0-20:4 (1)
PS 18:0-20:2 (1)

First Public Date

2026 (3)
2024 (3)
2017 (2)
2016 (2)
2014 (2)
2025 (1)
2021 (1)
2020 (1)
2018 (1)

Modification

4x(2)H labeled dimethylated residue (1)
-18.010565 (1)
-17.026549 (1)
42.010565 (1)
Not available (1)
57.021464 (1)

Study type

Transcription profiling by array (97)
ChIP-seq (42)
ChIP-chip by array (31)
RNA-seq of coding RNA (28)
RNA-seq of coding RNA from single cells (13)
Other (12)
RNA-seq of non coding RNA (10)
Methylation profiling by array (9)
ChIP-chip by tiling array (8)
Methylation profiling by high throughput sequencing (8)
Unknown experiment type (3)
DNA-seq (3)
RNA-seq of total RNA (3)
High-throughput sequencing (2)
Animal - High-throughput sequencing (2)
MicroRNA profiling by high throughput sequencing (2)
Comparative genomic hybridization by array (2)
MicroRNA profiling by array (2)
Transcription profiling by SAGE (1)
RNA-seq of non coding RNA from single cells (1)
MeDIP-seq (1)
Animal - Single-cell sequencing (1)
Cell line - High-throughput sequencing (1)
Transcription profiling by tiling array (1)
Hi-C (1)
ScATAC-seq (1)
Single nucleus RNA sequencing (1)

Release Date

2013 (52)
2015 (41)
2014 (39)
2011 (29)
2010 (29)
2008 (29)
2021 (27)
2018 (26)
2012 (23)
2023 (22)
2016 (19)
2020 (17)
2007 (17)
2025 (16)
2022 (15)
2009 (15)
2006 (15)
2026 (11)
2019 (11)
2005 (11)
2024 (10)
2017 (9)
1997 (5)
2004 (3)
2002 (3)
2003 (2)
2001 (2)
2000 (2)
1996 (1)

Lab affiliation

Cambridge Institute for Medical Research, University of Cambridge, Hills Road, Cambridge, CB2 0XY, UK (5)
University of Alabama at Birmingham, O'Neal Mass Spectrometry Proteomics Shared Facility (4)
University of Greifswald, Institute for Microbiology, Department for Microbial Proteomics (3)
The University of Melbourne (3)
1 Department of Cardiac Surgery, Fujian Medical University Union Hospital, Fuzhou, China 2 Department of Toxicology, Fujian Center for Evaluation of New Drug, Fujian Medical University, Fuzhou, China (2)
Department of Plant Physiology and Biochemistry, University of Hohenheim, 70599 Stuttgart, Germany (2)
Paracelsus Private Medical University, Salzburg, Austria (2)
Institute of Microbiology, Department of Microbial Proteomics, Center for Functional Genomics of Microbes, University of Greifswald, 17489 Greifswald, Germany (2)
University of Greifswald, Institute of Microbiology, Department of Microbial Proteomics, Felix-Hausdorff-Str. 8, 17489 Greifswald, Germany (2)
Department of Cell Biology, School of Medicine, Johns Hopkins University, Baltimore, MD, USA (2)
Institute of Physiology II Universität Freiburg Germany (2)
University of Greifswald, Institute of Microbiology, Department of Microbial Proteomics, Greifswald, Germany (2)
Agrochemistry and Biochemistry Department. University of Alicante (1)
Biochemistry & Molecular Biology (1)
Department of Pharmaceutical Sciences School of Pharmacy and Pharmaceutical Sciences University at Buffalo, State University of New York (1)
Bascom Palmer Eye Institute, Department of Ophthalmology, Miller School of Medicine at University of Miami, Miami, FL 33136, USA +1 (305) 4824103 (1)
1 Biomolecular Mass Spectrometry and Proteomics, Bijvoet Center for Biomolecular Research and Utrecht Institute for Pharmaceutical Sciences, University of Utrecht, Padualaan 8, 3584 CH Utrecht, The Netherlands 2 Netherlands Proteomics Center, Padualaan 8, 3584 CH Utrecht, The Netherlands (1)
Institute for Microbiology, Department of Microbial Proteomics, Ernst Moritz Arndt University Greifswald, Germany (1)
Professor University Research Chair in Integrative Mitochondrial Biology Interdisciplinary School of Health Sciences, Faculty of Health Sciences University of Ottawa RGN building, 451 Smyth Road, Ottawa, ON K1H 8M5 Canada (1)
Division of Glycoscience, School of Engineering Sciences in Chemistry, Biotechnology and Health, Royal Institute of Technology (KTH), AlbaNova University Centre, Stockholm, Sweden (1)
State Key Laboratory of Marine Environmental Science / College of the Environment and Ecology, Xiamen University, China (1)
NSW Department of Primary Industries, JSF Barker Building, Trevenna road, University of New England, Armidale, NSW 2351 (1)
Center for Biomedical Mass Spectrometry, Department of Biochemistry, Boston University School of Medicine, Boston, MA, USA (1)
Organic Mass Spectrometry Laboratory, Department of Chemical Sciences, University of Catania, Via S. Sofia 64, 95123 Catania, Italy (1)
Protein Expression and Modification Division Research Department New England Biolabs United States (1)
Division of Pharmacotherapy and Experimental Therapeutics, UNC Eshelman School of Pharmacy, University of North Carolina at Chapel Hill, USA (1)
Unité d’Immunobiologie de l’Infection, Institut Pasteur, Paris, France (1)
Department of Plant Physiology, University of Rostock, Germany (1)
Hematology, Department of Translational and Precision Medicine, Sapienza University, Rome, Italy. (1)
Université Paris-Saclay, INRAE, AgroParisTech, MICALIS, Jouy-en-Josas, France (1)

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Membrane-Enriched Brain Proteome Across Stages of Alzheimer's Disease

Previous systems-based proteomic approaches have characterized alterations in protein co-expression networks of unfractionated asymptomatic (AsymAD) and symptomatic Alzheimer’s disease (AD) brains. However, it remains unclear how sample fractionation and sub-proteomic analysis influences the organi...

ORGANISM(S): Homo sapiens (Human)

2019-09-02 | PXD014376 | Pride

Ad Synaptic proteome Transmembrane proteins

Proteomics quantification of striatal fraction from DAT-KO and WT rats

The study aimed to find out quantitative changes at the protein level in the total membrane fraction enriched in synaptosomes and mitochondria upon the absence of the dopamine transporter in rat brain. Therefore, the brain of male rats (Wister Han) DAT-wildtype and DAT-knockout animals, were dissect...

ORGANISM(S): Rattus norvegicus (Rat)

2022-05-19 | PXD028157 | Pride

Lc-msms Dat-ko Knockout Striatum Rat Brain Dat Proteomics Dopamine transporter

Plasma and crude membrane fraction from mouse liver and kidney

The purpose of the present study was to validate the enrichment of transporter proteins in plasma membrane fraction prepared from mouse liver and kidney with Membrane Protein Extraction Kit by means of beads homogenize for efficient subcellular fractionation. The crude and plasma membrane fractions ...

ORGANISM(S): Mus Musculus (mouse)

2020-09-26 | PXD018161 | JPOST Repository

Proteomic characterization of plasma membrane-enriched fraction from tobacco (Nicotiana tabacum L. cv Samsun) pollen tubes.

Pollen germination and subsequent pollen tube elongation are essential for successful land plant reproduction. These processes are achieved through well-documented activation of membrane trafficking and cell metabolism. Despite this, our knowledge of the dynamics of cellular phospholipids remains sc...

ORGANISM(S): Nicotiana tabacum (Common tobacco)

2022-10-27 | PXD037046 | Pride

Pollen tube Tobacco Tip growth Plasma membrane Polarity Pollen

Separation of α-Lactalbumin Enriched Fraction from Bovine Native Whey Concentrate by Combining Membrane and High-Pressure Processing.

Not available

S-EPMC9914712 | biostudies-literature

Proteomic analysis of the membrane-enriched fraction of trypomastigostes released from wild type, LAMP1/2 KO or LAMP2 KO fibroblasts

Trypanosoma cruzi invades non-professional phagocytic cells by subverting their membrane repair process, which is dependent on membrane injury and cell signaling, intracellular calcium increase and lysosome recruitment. Cells lacking Lysosome Associated Membrane Proteins 1 and 2 are less permissive ...

ORGANISM(S): Trypanosoma cruzi

2022-02-17 | PXD028897 | Pride

Membrane-enriched fraction Tmt labeling Trypanosoma cruzi

The transcriptome of central nervous system myelin

Rapid nerve conduction in the CNS is facilitated by the insulation of axons with myelin, a specialized oligodendroglial compartment distant from the cell body. Myelin is turned over and adapted throughout life; however, the molecular and cellular basis of myelin dynamics is not well understood. Hypo...

ORGANISM(S): Mus musculus

2016-06-24 | E-GEOD-78151 | biostudies-arrayexpress

Transcription profiling of CD34+CD38- vs CD34+CD38+ fractions of human umbilical cord blood and comparison of slow-dividing fraction vs the fast dividing fraction of CD34+/CD38- population

Comparison of the CD34+CD38- versus CD34+CD38+ fractions of human umbilical cord blood and comparison of the slow-dividing fraction versus the fast dividing fraction of the CD34+/CD38- population.

ORGANISM(S): Homo sapiens

2005-09-08 | E-EMBL-1 | biostudies-arrayexpress

The phagocyte NADPH oxidase depends on cholesterol-enriched membrane microdomains for assembly.

Not available

S-EPMC380990 | biostudies-literature

Label-free quantitative proteomic analysis of DNA methyltransferase mutants of the cyanobacterium Synechocystis sp. PCC 6803 – Analysis of the membrane-enriched fraction

Total protein and membrane-enriched fractions of Synechocystis sp. PCC 6803 wild type (WT) and mutant strains affected with inactivated DNA methyltransferase genes were analyzed by LC-HDMSE. The mutation of the DNA methyltransferase gene sll0729 encoding M.Ssp6803II initially led to a strong phenoty...

ORGANISM(S): Synechocystis sp. (strain PCC 6803 / Kazusa)

2019-06-26 | PXD012698 | Pride

Dna methyltransferase Hdmse Label-free quantification Suppressor mutants Synechocystis sp. pcc 6803

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777 Results

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