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ModelsAurora Kinase A in Neuroblastoma
Aurora Kinase A (AURKA) is often overexpressed in neuroblastoma (NB) with poor outcome. The causes of AURKA overexpression in NB are unknown. Here, we describe a gene regulatory network consisting of core regulators of AURKA protein expression and activation during mitosis to identify potential caus...
7916 | Cell Collective
ProteomicsA. muciniphila, B. longum, E. coli, headspace metabolites
Culture headspaces of A. muciniphila, B. longum, E. coli, and sterile media controls using sorbent tubes and GCMS (Figure 3C)
ORGANISM(S): Bifidobacterium Longum Subsp. Longum (ncbitaxon:1679) Escherichia Coli (ncbitaxon:562) Bhi-mucin Akkermansia Muciniphila (ncbitaxon:239935) 
2024-07-15 | MSV000095341 | MassIVE
ProteomicsExamples of output air collected from a mice ventilator
Examples of output air collected from a mice ventilator. mzML files used to generate Figure 6S C.
ORGANISM(S): C57bl/6 Mice 
2025-07-30 | MSV000098687 | MassIVE
TranscriptomicsComparative genomic hybridization of Clostridium sporogenes and Clostridium botulinum strains
Clostridium botulinum is a heterogeneous Gram-positive species that comprises four genetically and physiologically distinct groups of bacteria that share the ability to produce botulinum neurotoxin, the most poisonous toxin known to man, and the causative agent of botulism, a severe disease of human...
ORGANISM(S): Clostridium botulinum 
2007-05-23 | E-TABM-264 | biostudies-arrayexpress
TranscriptomicsAirway Epithelial Cell Response to Sendai virus infection
Oligonucleotide microarrays were used to establish a profile for gene expression in wild-type airway epithelial cells after paramyxoviral infection. Analysis was performed on mRNA isolated from SeV-infected primary-culture mouse tracheal epithelial cells that were maintained under physiologic condit...
ORGANISM(S): Mus musculus 
2009-04-25 | E-GEOD-10211 | biostudies-arrayexpress
TranscriptomicsGene expression profiling of Bone-Marrow-Derived-Macrophages (5 days of culture) in a backcross population of LEW and WKY
WKY and LEW strains have been widely studied for their differential susceptibility to experimental glomerulonephritis. In particular these strains show strong variations in the macrophage activation. This dataset measures expression of macrophages in backcross population of WKY DC and LEW rats and ...
ORGANISM(S): Rattus norvegicus 
2014-08-31 | E-MTAB-2719 | biostudies-arrayexpress
UnknownHyperfractionated or accelerated radiotherapy in lung cancer: an individual patient data meta-analysis.
Not available
S-EPMC4934452 | biostudies-literature
ProteomicsBreath Metabolites from Healthy and Asthmatic Children
mzML files used to generate Figure 1 A-F, Figure S1 D-E, Figure 6 B, Figure S5 D-F. Breath samples collected from healthy and asthmatic children
ORGANISM(S): Homo Sapiens (ncbitaxon:9606) 
2024-07-15 | MSV000095340 | MassIVE
ProteomicsMetabolites from anaerobic culture headspace
This is GCxGC MS data from headspace VOCs from A. muciniphila, B. thetaiotaomicron, Collinsella aerofaciens, E. coli, and Ruminococcus torques and sterile media controls. Raw files in CDF format. (Fig 4A , Fig 5, Fig 3B from associated publication)
ORGANISM(S): Escherichia Coli (ncbitaxon:562) Bacteroides Thetaiotaomicron (ncbitaxon:818) Collinsella Aerofaciens (ncbitaxon:74426) Akkermansia Muciniphila (ncbitaxon:239935) [ruminococcus] Torques (ncbitaxon:33039) 
2025-07-30 | MSV000098693 | MassIVE
ProteomicsThe exhaled breath of monocolonized mice
This is GCxGC MS raw data from exhaled breath from colonized gnotobiotic mice with one of five common gut commensals including A. muciniphila, B. thetaiotaomicron, Collinsella aerofaciens, E. coli, and Ruminococcus torques and sterile media controls. Raw files in CDF format. (Fig 4B, Fig 5 from asso...
ORGANISM(S): Escherichia Coli (ncbitaxon:562) Gnotobiotic Mice Bacteroides Thetaiotaomicron (ncbitaxon:818) Collinsella Aerofaciens (ncbitaxon:74426) Akkermansia Muciniphila (ncbitaxon:239935) [ruminococcus] Torques (ncbitaxon:33039) 
2025-07-30 | MSV000098692 | MassIVE
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