Nano-hplc-ms - OmicsDI

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Proteomics (2723)
Unknown (68)
Metabolomics (2)
Transcriptomics (1)

Organisms

Homo sapiens (2678)
Mus musculus (2678)
Rattus norvegicus (2678)
Saccharomyces cerevisiae (2678)
Allexis (2677)
Arabidopsis thaliana (2677)
Entamoeba histolytica HM-1:IMSS-A (2677)
Escherichia coli (2677)
Listeria monocytogenes (2677)
Schizosaccharomyces pombe (2677)
Solanum tuberosum (2677)
Staphylococcus aureus (2677)
Medicago truncatula (2676)
Sinorhizobium meliloti BL225C (2676)
Sus scrofa domesticus (2676)
Bos taurus (2675)
Callinectes sapidus (2675)
Drosophila melanogaster (2675)
Leishmania major strain Friedlin (2675)
Meleagris gallopavo (2675)
Homo sapiens (4)
Arabidopsis thaliana (1)
Mus musculus (1)
Aeromonas hydrophila subsp. hydrophila ATCC 7966 (1)
Bufo gargarizans gargarizans (1)
Bungarus sindanus (1)
Gallus gallus (1)
Streptococcus pneumoniae PT8114 (1)
Vibrio natriegens (1)
Saccharomyces cerevisiae (1)

Repository

pride (2679)
MassIVE (31)
iProX (6)
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biostudies-arrayexpress (2)
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NODE (1)

Tissue

Cell culture (571)
Epithelial cell (180)
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Liver (86)
Blood plasma (71)
Blood (67)
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T cell (46)
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Heart (36)
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Blood cell (32)
Primary cell (30)
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Root (27)
Bone marrow (24)
Cell line (1)

Disease

Disease free (75)
Colon cancer (55)
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Acute leukemia (34)
Cervix carcinoma (18)
COVID-19 (16)
Malignant neoplasm of ovary (16)
Hepatocellular carcinoma (14)
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Wounds and Injuries (13)
Cardiovascular system disease (12)
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Melanoma (10)
Type 2 diabetes mellitus (10)
Parkinson's disease (9)
Lung cancer (8)
Lymphoma (8)
Multiple myeloma (8)
Non-small cell lung carcinoma (8)
Tuberculosis (8)
Brain cancer (7)
Brain glioblastoma multiforme (6)
Multiple sclerosis (6)
Obesity (6)
Pancreatic ductal adenocarcinoma (6)
Carcinoma (5)

Technology Type

Mass Spectrometry (2679)
Shotgun proteomics (1522)
Bottom-up proteomics (406)
Affinity purification coupled with mass spectrometry proteomics (339)
Data-dependent acquisition (228)
Gel-based experiment (225)
Data-independent acquisition (129)
Chemical cross-linking coupled with mass spectrometry proteomics (101)
Top-down proteomics (84)
SWATH MS (82)
SRM/MRM (38)
All-ion fragmentation (18)
Affinity proteomics (12)
Mass spectrometry imaging (10)
DiaPASEF (8)
MSE (5)
HDMSE (4)
Metaproteomics (3)
Proteogenomics (3)
Mass spectrometry (2)
Glycoproteomics (1)
Immunopeptidomics (1)
RNA mass spectrometry (1)

Instrument Platform

LTQ (5)
LTQ Orbitrap Elite (5)
Q Exactive (5)
LTQ Orbitrap Velos (3)
LTQ XL (2)
LTQ XL ETD (2)
Q Exactive HF (2)
LTQ Orbitrap Classic (Thermo Scientific) (2)
Impact (1)
LTQ Orbitrap (1)
LTQ Orbitrap Velos Pro (1)
Orbitrap Ascend (1)
Orbitrap Exploris 480 (1)
Orbitrap Fusion (1)
Q Exactive Plus (1)
Q Exactive plus (Thermo Scientific instrument model) (1)
TimsTOF Pro 2 (1)

Publication Date

2025 (365)
2023 (330)
2024 (325)
2022 (315)
2021 (298)
2020 (252)
2019 (202)
2026 (177)
2018 (146)
2017 (112)
2016 (97)
2015 (65)
2014 (24)
2013 (9)
2010 (1)
2009 (1)
2012 (1)

CHEBI ID

CHEBI:18272 (2)
CHEBI:27465 (2)
CHEBI:37713 (2)
CHEBI:17969 (2)
CHEBI:18199 (2)
CHEBI:16077 (2)
CHEBI:17052 (2)
CHEBI:17994 (2)
CHEBI:18319 (2)
CHEBI:18066 (2)
CHEBI:17013 (2)
CHEBI:15713 (2)
CHEBI:16264 (2)
CHEBI:17659 (2)
CHEBI:15721 (2)
CHEBI:48928 (2)
CHEBI:17050 (2)
CHEBI:16695 (2)
CHEBI:17533 (2)
CHEBI:52742 (2)
CHEBI:78682 (2)
CHEBI:15351 (2)
CHEBI:14314 (2)
CHEBI:15996 (2)
CHEBI:17552 (2)
CHEBI:15422 (2)
CHEBI:16027 (2)
CHEBI:16761 (2)
CHEBI:17345 (2)
CHEBI:80922 (1)

Metabolite Name

5'-phosphoribosyl-N-formylglycinamide (2)
5'-Thymidylic acid (2)
N-Acetyl-D-glucosamine 1,6-bisphosphate (2)
O-phospho-D-serine (2)
Shikimate-3-phosphate (2)
Sedoheptulose 1,7-bisphosphate (2)
Acetyl-CoA (2)
SAICAR (2)
5'-Guanylic acid (2)
Guanosine 5'-diphosphate (2)
UDP-N-acetylmuramoyl-L-alanyl-D-gamma-glutamyl-6-carboxy-L-lysyl-D-alanyl-D-alanine (2)
Uridine diphosphate glucose (2)
Ribose 1,5-bisphosphate (2)
Glucose-1-phosphate (2)
Uridine triphosphate (2)
Adenosine diphosphate (2)
Uridylic acid (2)
Adenosine 5'-monophosphate (2)
Sedoheptulose 7-phosphate (2)
Glucose-6 phosphate (2)
UDP-GlcNAc (2)
Adenosine triphosphate (2)
Guanosine triphosphate (2)
D-Fructose 1,6-bisphosphate (2)
N-Acetyl-L-glutamic acid (2)
Uridine 5'-diphosphate (2)
D-Ribose 5-phosphate (2)
6-phosphogluconic acid (2)
Uridine-5'-diphosphate-N-acetylmuramoyl-L-alanine (1)
Oxiglutatione (1)

Modification

4-tetrahydrothiazine-3-carboxylic acid (10)
4x(15)N labeled L-arginine (9)
2x(15)N labeled L-lysine (7)
15.994915 (6)
57.021464 (6)
-17.026549 (3)
42.010565 (3)
79.966331 (3)
-18.010565 (2)
N6-dimethyl-L-lysine (2)
Not available (2)
+3amu) (1)
0.984016 (1)
4 (1)
4-dinitrophenyl modified residue (1)
6x(2)H labeled dimethylated L-arginine (1)
N6 (1)

Study type

Proteomic profiling by mass spectrometer (1)
ChIP-chip by array (1)

Release Date

2019 (8)
2018 (7)
2010 (6)
2025 (6)
2024 (5)
2022 (5)
2023 (4)
2017 (4)
2013 (4)
2011 (4)
2009 (3)
2021 (3)
2020 (3)
2014 (3)
2016 (2)
2008 (2)
2012 (1)

Lab affiliation

Department of Biochemistry and Functional Proteomics, Institute of Biology II, Faculty of Biology and BIOSS Centre for Biological Signalling Studies, University of Freiburg, 79104 Freiburg im Breisgau, Germany (20)
University of Vienna, Faculty of Chemistry, Department of Analytical Chemistry (19)
Max Planck Institute for Terrestrial Microbiology Karl-von-Frisch Str. 10 35043 Marburg Germany (13)
Head Proteomics Group, Leiden University Medical Center, Center for Proteomics and Metabolomics, PO Box 9600, Postal zone P1-Q, 2300 RC Leiden, The Netherlands (10)
NCI/NIH CSB (10)
Centre for Proteome Research, University of Liverpool, Liverpool, UK (9)
Department of Convergence Medicine, Convergence Medicine Research Center/Biomedical Research Center, Asan Medical Center, Asan Institute for Life Sciences, University of Ulsan College of Medicine, 88 Olympic-ro 43-gil, Songpa-gu, Seoul 05505, Republic of Korea. (8)
University of Warwick (8)
Department of Biomedical Sciences, University of Padova, Italy (7)
Evolutionary and translational venomics Lab, Instituto de Biomedicina de Valencia, CSIC (7)
Shemyakin-Ovchinnikov Institute of Bioorganic Chemistry of the Russian Academy of Sciences (7)
Biozentrum, University of Basel, Switzerland (6)
Chair of Biochemistry II, Theodor Boveri-Institute, Biocenter, University of Würzburg, Würzburg, Germany (6)
Forschungszentrum Juelich ZEA-3 Analytics Wilhelm-Johnen-Str D-52425 Juelich Germany (6)
Universität Greifswald Institut für Pharmazie, AG Pharmazeutische Biotechnologie Greifswald, Germany (6)
Centre for Cancer Cell & Molecular Biology Barts Cancer Institute Queen Mary University of London Charterhouse Square London EC1M 6BQ U.K. (5)
Centre for Cancer Cell & Molecular Biology, Barts Cancer Institute, Queen Mary University of London, Charterhouse Square, London EC1M 6BQ, UK. (5)
Department of Biochemistry and Functional Proteomics, Institute of Biology II, Faculty of Biology and Signalling Research Centres BIOSS and CIBSS, University of Freiburg, 79104 Freiburg im Breisgau, Germany (5)
Head Proteomics Group, Leiden University Medical Center, Center for Proteomics and Metabolomics, PO Box 9600, Postal zone P1-Q, 2300 RC Leiden, The Netherlands (5)
Laboratory of Experimental Cancer Research, Department of Human Structure and Repair, Ghent University, Ghent, Belgium (5)
Proteomics Core Facility, Biozentrum, University of Basel, Switzerland (5)
University of Michigan (5)
University of Oxford (5)
1) Department of Biology, Institute of Molecular Systems Biology, ETH Zurich, Switzerland 2) Faculty of Science, University of Zurich, Zurich, Switzerland (4)
Cornell University (4)
Functional Proteomics Lab, Faculty of Biology, University of Freiburg, Germany (4)
Institute of Biochemistry II, Faculty of Medicine, Goethe University, Frankfurt, Germany (4)
King's College London (4)
Laboratory of Microbiology Oceanography, State Key Laboratory of Microbial Metabolism, School of Life Sciences and Biotechnology, State Key Laboratory of Ocean Engineering, Shanghai Jiao Tong University, School of Oceanography, Shanghai JiaoTong University (4)
Lomonosov Moscow State University (4)

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mouse skeletal muscle nano-HPLC-MS/MS

differential proteomics regulated by ITGB6 in sakeletal muscle satellite cells

ORGANISM(S): Mus musculus (Mouse)

2022-08-12 | PXD028650 | Pride

Validation of MALDI-MS imaging data of selected membrane lipids in murine brain with and without laser postionization by quantitative nano-HPLC-MS using laser microdissection.

Not available

S-EPMC7496020 | biostudies-literature

Improved Sensitivity in Low-Input Proteomics using Micro-Pillar Array-based Chromatography

Capitalizing on the massive increase in sample concentrations which are produced by extremely low elution volumes, nano-LC-ESI-MS/MS is currently the most sensitive analytical technology for the comprehensive characterization of complex protein samples. However, despite tremendous technological impr...

ORGANISM(S): Homo sapiens (Human)

2019-10-23 | PXD014124 | Pride

Nano-lc-esi-ms/ms nano-flow hplc hela cell digest

Proteomic profile of Cephalosporin-Resistant Neisseria gonorrhoeae Isolates by low pH nano-HPLC-MS/MS

The experiment was performed using three N. gonorrhoeae clinical isolates and N. gonorrhoeae strain ATCC 49226 was used as a reference strain. Tandem mass spectra were processed by PEAKS Studio version 8.5 (Bioinformatics Solutions Inc., Waterloo, Canada). PEAKS DB was set up to search the database ...

ORGANISM(S): Neisseria gonorrhoeae

2019-10-22 | PXD015296 | Pride

Low ph nano-hplc-ms/ms cephalosporin-resistant neisseria gonorrhoeae

PneKC lanthipeptide Nano-HPLC-MS/MS

identification and characterization of class III antiviral lanthipeptide arrested at various stages of sequencial modification and maturation.

ORGANISM(S): Streptococcus Pneumoniae Pt8114

PXD047786 |

Msmeg overexpressing rv2577- protein identification in different cellular fractions

The presence of Rv2577 in the cell wall and soluble fractions was determined by nano-HPLC- MS/MS

ORGANISM(S): Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155)

2021-09-09 | PXD019769 | Pride

Rv2577 Mycobacteria

Nano HPLC Chip Ion Trap MS/MS of human pancreatic cancer cells

Proteins extracted from Panc1 cells (untreated or treated with ACPA or GW), were analyzed by 2-DE. Modulated proteins were identified by nanoHPLC Chip Ion trap. Bioinformatics pipeline: Mascot search was applied using the MS/MS ion search of Mascot against human entries of the non-redundant NCBI dat...

ORGANISM(S): Homo sapiens (Human)

2014-07-10 | PXD000119 | Pride

Human Lc ms/ms Panc1 cells

Detection of plant protein in adulterated milk using nontargeted nano-high-performance liquid chromatography-tandem mass spectroscopy combined with principal component analysis.

Not available

S-EPMC6341172 | biostudies-literature

Proteomic analysis of exudate of Cercospora armoraciae from Armoracia rusticana

Cercospora armoraciae causes leaf spot disease on Armoracia rusticana. Exudation of droplets, when grown on PDA, distinguishes this fungi from other members of the genus Cercospora. The role this exudate plays in the virulence of this pathogen has not been elucidated. To explore this, we characteriz...

ORGANISM(S): Cercospora armoraciae

2020-07-16 | PXD019663 | Pride

Exudate cercospora armoraciae

Nano-HPLC-MS/MS analysis for proteins encoded by circRNA in myoblasts and myotubes

The MS/MS spectra were searched against a custom protein database from span back-splice junction circRNA open reading frame prediction.

ORGANISM(S): Gallus Gallus

PXD021030 |

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