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ProteomicsSphingobium indicum B90A nLC-MS/MS
The project aims to to understand the response of the lin genes in Sphingobium indicum B90A under the stress of HCH isomers and the metabolites formed during degradation of hexachlorocyclohexane (HCH). Entire cell proteome from Sphingobium indicum B90A was extracted in presence of four HCH isomers. ...
ORGANISM(S): Sphingobium indicum B90A 
2021-04-06 | PXD018599 | Pride
Sphingobium indicum b90a Hexacholorocyclohexane Stress response Nlc-ms/ms Proteome 
ProteomicsIdiopathic epiretinal membrane compared with inner limiting membrane
We compared the proteome of epiretinal membrane of iERM with the proteome of the inner limiting membrane (ILM) of idiopathic macular hole (iMH). Twelve epiretinal membrane samples from iERM were compared with twelve ILM samples obtained from from iMH. Proteomic analysis was conducted with LFQ nLC-MS...
ORGANISM(S): Homo sapiens (Human) 
2019-07-18 | PXD014286 | Pride
Macular hole : epiretinal membrane Internal limiting membrane Lc-ms/ms 
UnknownMuscle proteomics reveals biomarkers of stress and meat quality in organic versus conventional broiler chickens.
Not available
S-EPMC12723023 | biostudies-literature
UnknownPhospho-heavy-labeled-spiketide FAIMS stepped-CV DDA (pHASED) provides real-time phosphoproteomics data to aid in cancer drug selection.
Not available
S-EPMC9762002 | biostudies-literature
ProteomicsBenchmarking LFQ, SILAC and MS2/MS3-based TMT quantification strategies for large-scale phosphoproteomics
Comprehensive mass spectrometry (MS)-based proteomics is now feasible, but reproducible and multiplexed quantification remains challenging especially for analysis of post-translational modifications (PTMs), such as phosphorylation. Here we compared the most popular quantification techniques for phos...
ORGANISM(S): Homo sapiens (Human) Saccharomyces cerevisiae (Baker's yeast) 
2018-03-13 | PXD007145 | Pride
Phosphoproteomics Ms3 Ms2 Tmt Silac Lfq Technical Benchmark Quantification 
ProteomicsLabel-free quantification (LFQ) analysis of Sphingopyxis granuli TFA wild-type and ΔsuhB strains during exponential and stationary growth phases
A comparative LFQ-based proteomic analysis was performed to assess differences in protein abundance between Sphingopyxis granuli TFA WT and the small RNA mutant ΔsuhB strains during exponential and stationary growth in minimal medium supplemented with 40 mM β-hydroxybutyrate (BHB)
ORGANISM(S): Sphingopyxis granuli Bacteria 
2026-05-18 | PXD073771 | Pride
Proteomics Suhb Small rna Regulon 
ProteomicsColorectal cancer anti-ORF1p LFQ IP-MS
Here, three colorectal tumors were subjected to anti-ORF1p LFQ, IP-MS: (A) Krukenberg Carcinoma, Ovary; (B) Metastatic Rectal Adenocarcinoma, Liver; (C) Adenocarcinoma, Colon. These were accompanied by matched normal IP controls and/or mouse IgG IP controls. The objective is to map LINE-1 RNP intera...
ORGANISM(S): Homo sapiens (Human) 
2019-08-23 | PXD013743 | Pride
Lc-msms Patient tumor Line-1 L1 Retrotransposon Crc 
ProteomicsHuman mitochondrial protein import proteomics LFQ
Most mitochondrial proteins are encoded in the nucleus and require mitochondrial import after translation in the cytosol. A number of mutations in the mitochondrial protein import machinery have been shown to lead to human pathologies. However, a lack suitable tools to measure mitochondrial protein ...
ORGANISM(S): Homo sapiens (Human) 
2021-12-18 | PXD024054 | Pride
Meprod Mitochondrial import Lfq Human 
ProteomicsTime-resolved proteomic profiling for CHO-K1 fed-batch cultivations
The majority of recombinant protein therapeutics are produced with Chinese Hamster Ovary (CHO) cells. Productivity depends on the initial cell line engineering in terms of integration site or choice of an appropriate promotor for the recombinant gene expression, as well as media and process paramete...
ORGANISM(S): Cricetulus griseus (Chinese hamster) (Cricetulus barabensis griseus) 
2021-01-25 | PXD018439 | Pride
Fedbatch cultivation Nlc-ms/ms Cho Proteomics Dda 
ProteomicsProteomics and immunoproteomics of Anoplocephala perfoliata
Anoplocephala perfoliata is a common tapeworm in horse with an ability to cause colic and increase mortality. At present, current diagnostic methods are not sensitive enough to detect A. perfoliata and immunoreactive excretory/secretory (E/S) proteins produced by this parasite, which comprise the mo...
ORGANISM(S): Anoplocephala perfoliata 
2022-11-11 | PXD029144 | Pride
Perseus E/s proteins Tapeworm Parasite Horse Maxquant Lc-ms/ms 1d immunoblotting 
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