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UnknownFragment ion intensity prediction improves the identification rate of non-tryptic peptides in timsTOF.
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S-EPMC11087512 | biostudies-literature
ProteomicsProteomeTools Part V - TMT labeled non-modified non-tryptic peptides
The ProteomeTools project aims to derive molecular and digital tools from the human proteome to facilitate biomedical and life science research. Here, we describe the the generation and multimodal LC-MS/MS analysis of >300,000 synthetic non-tryptic peptides labeled with tandem mass tags (TMT6plex).
ORGANISM(S): Homo sapiens (Human) 
2021-04-26 | PXD023120 | Pride
Synthetic peptide Tmt Proteometools Tandem mass tag 
ProteomicsProteomeTools – Part III - HLA Class I & II & non-tryptic peptides
The ProteomeTools project aims to derive molecular and digital tools from the human proteome to facilitate biomedical and life science research. Here, we describe the third iteration of the generation and multimodal LC-MS/MS analysis of >305,000 synthetic non-tryptic peptides representing HLA Class ...
ORGANISM(S): Homo sapiens (Human) 
2021-04-26 | PXD021013 | Pride
Hla Aspn Hla class ii Proteometools Reference standards Hla class i Synthetic peptides Lysn 
ProteomicsProteomeTools – Part III - HLA Class I & II & non-tryptic peptides
The ProteomeTools project aims to derive molecular and digital tools from the human proteome to facilitate biomedical and life science research. Here, we describe the third iteration of the generation and multimodal LC-MS/MS analysis of >305,000 synthetic non-tryptic peptides representing HLA Class ...
ORGANISM(S): Homo Sapiens (ncbitaxon:9606) 
2024-10-21 | MSV000096140 | MassIVE
ProteomicsProteomeTools Part V - TMT labeled non-modified non-tryptic peptides
The ProteomeTools project aims to derive molecular and digital tools from the human proteome to facilitate biomedical and life science research. Here, we describe the the generation and multimodal LC-MS/MS analysis of >300,000 synthetic non-tryptic peptides labeled with tandem mass tags (TMT6plex).
ORGANISM(S): Homo Sapiens (ncbitaxon:9606) 
2025-10-09 | MSV000099441 | MassIVE
ProteomicsFragment ion intensity prediction improves the identification rate of non-tryptic peptides in TimsTOF
Immunopeptidomics plays a crucial role in identifying targets for immunotherapy and vaccine development. Because the generation of immunopeptides from their parent proteins does not adhere to clear-cut rules, rather than being able to use known digestion patterns, every possible protein subsequence ...
ORGANISM(S): Homo Sapiens (ncbitaxon:9606) 
2023-07-17 | MSV000092456 | MassIVE
ProteomicsProteomeTools Part IV - TMT labeled non-modified tryptic peptides
The ProteomeTools project aims to derive molecular and digital tools from the human proteome to facilitate biomedical and life science research. Here, we describe the the generation and multimodal LC-MS/MS analysis of >500,000 tryptic synthetic peptides labeled with tandem mass tags (TMT6plex).
ORGANISM(S): Homo sapiens (Human) 
2021-01-11 | PXD023119 | Pride
Synthetic peptide Tmt Proteometools Tandem mass tag 
ProteomicsProteomeTools Part IV - TMT labeled non-modified tryptic peptides
The ProteomeTools project aims to derive molecular and digital tools from the human proteome to facilitate biomedical and life science research. Here, we describe the the generation and multimodal LC-MS/MS analysis of >500,000 tryptic synthetic peptides labeled with tandem mass tags (TMT6plex).
ORGANISM(S): Homo Sapiens (ncbitaxon:9606) 
2023-04-10 | MSV000091673 | MassIVE
OtherIdentification of targets of the protein disulfide reductase thioredoxin
Identification of targets of the protein disulfide reductase thioredoxin using liquid chromatography coupled to tandem mass spectrometry (LC-MS/MS) and thiol specific differential labeling with isotope-coded affinity tags (ICAT). Reduction of specific target disulfides is quantified by measuring rat...
ORGANISM(S): Hordeum vulgare 
2008-11-20 | GSE11650 | GEO
ProteomicsProteomeTools Part VI - Citrullinated peptides
The ProteomeTools project aims to derive molecular and digital tools from the human proteome to facilitate biomedical and life science research. Here, we describe the the generation and multimodal LC-MS/MS analysis of ~4200 tryptic and non-tryptic synthetic citrullinated peptides.
ORGANISM(S): Homo sapiens (Human) 
2025-02-11 | PXD056559 | Pride
Proteomics Prosit Mass spectrometry Citrullination Proteometools Deep learning 
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