Orbi-trap - OmicsDI

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Proteomics (32)
Unknown (2)

Organisms

Aerococcus urinae NBRC 15544 = CCUG 36881 (30)
Alteromonadales (30)
Candida albicans SC5314 (30)
Canis lupus familiaris (30)
Carya cathayensis (30)
Clostridioides difficile 630 (30)
Cyanophora paradoxa (30)
Ectopseudomonas oleovorans CECT 5344 (30)
Ensifer adhaerens (30)
Enterococcus faecalis (30)
Globicatella sanguinis (30)
Halictus scabiosae (30)
Histomonas meleagridis (30)
Human immunodeficiency virus 1 (30)
Listeria monocytogenes (30)
Listeria monocytogenes EGD-e (30)
Methylohalobius crimeensis 10Ki (30)
Mus musculus (30)
Mycobacterium tuberculosis (30)
Ophrys garganica (30)
Ophrys sphegodes (30)
Pseudomonas aeruginosa SJTD-1 (30)
Pseudomonas putida KT2440 (30)
Pyrococcus furiosus (30)
Rattus norvegicus (30)
Rhizobium sp. Leaf68 (30)
Schizosaccharomyces pombe 927 (30)
Sphingomonas sp. Leaf257 (30)
Staphylococcus aureus (30)
Streptococcus dysgalactiae subsp. equisimilis SK1249 (30)

Repository

pride (30)
MassIVE (2)

Tissue

Cell culture (4)
Leaf (3)
Brain (2)
Epithelial cell (2)
Gluteal muscle (2)
Permanent cell line cell (2)
Photosynthetic cell (2)
Whole body (2)
Internode (1)
Jejunum (1)
Liver (1)
Lung (1)
Mesenchymal cell (1)
Plant cell (1)
Renal glomerulus (1)
Rosette (1)
Skeletal muscle (1)
Skeletal muscle fiber (1)
Skeletal muscle tissue (1)

Disease

Breast cancer (2)
Disease free (1)
Lung cancer (1)
Myofibrillar myopathy (1)

Technology Type

Mass Spectrometry (30)
Shotgun proteomics (12)
Bottom-up proteomics (9)
Affinity purification coupled with mass spectrometry proteomics (7)
Gel-based experiment (4)
Data-dependent acquisition (3)
Top-down proteomics (3)
Affinity proteomics (1)
Chemical cross-linking coupled with mass spectrometry proteomics (1)

Instrument Platform

LTQ Orbitrap Elite (2)

Publication Date

2025 (7)
2022 (7)
2021 (6)
2026 (3)
2023 (3)
2024 (2)
2020 (1)
2016 (1)
2013 (1)
2012 (1)

Release Date

2022 (1)
2021 (1)

Lab affiliation

Associate Professor Department of Microbiology and Immunology The G.W. Hooper Research Foundation The University of California, at San Francisco 513 Parnassus Ave, HSW 1532, Box 0552 San Francisco, CA 94143 (1)
BioDiscovery Institute, Department of Biological Sciences, University of North Texas (1)
Biochemistry and Molecular Biology, Michigan State University (1)
Biomolecular Mass Spectrometry and Proteomics, Bijvoet Center for Biomolecular Research, Utrecht University, Padualaan 8, 3584 CH Utrecht, The Netherlands Netherlands Proteomics Centre, Padualaan 8, 3584 CH Utrecht, The Netherlands (1)
Centre for Proteome Research, Biochemistry and Systems Biology Department, University of Liverpool (1)
David O. Morgan PhD Professor, Department of Physiology Vice Dean for Research, School of Medicine University of California, San Francisco Genentech Hall Room N312B 600 16th Street San Francisco CA 94143 415-476-6695 (1)
Department of Biochemistry & Biophysics, Texas A&M University, College Station, Texas 77843 (1)
Department of Biochemistry & Molecular Biology Michigan State University (lab head) (1)
Department of Biochemistry & Molecular Biology, Michigan State University (1)
Department of Biochemistry and Molecular Biology Uniformed Services University, Bethesda, MD United States of America (1)
Department of Biochemistry and System Biology, Institute of Systems, Molecular and Integrative Biology, University of Liverpool, Liverpool, L69 7ZB, UK (1)
Department of Cellular and Molecular Medicine, School of Medicine, University of California San Diego, La Jolla, CA. (1)
Department of Developmental and Molecular Biology, Albert Einstein College of Medicine, Bronx, NY 10461, USA. (1)
Department of Molecular and Cell Biology, University of California at Berkeley, Berkeley, CA 94720 USA California Institute for Quantitative Biosciences, University of California at Berkeley, Berkeley, CA 94720 Howard Hughes Medical Institute, University of California at Berkeley, Berkeley, CA 94720 USA (1)
Department of Neurology, Johns Hopkins University School of Medicine, Baltimore, Maryland, USA (1)
Dept Biomedical Sciences, School of Medicine and Health Sciences, Institute of Neurosciences, Universitat de Barcelona, E-08036 Barcelona (1)
Equine Neuromuscular Diagnostic Laboratory; Mary Anne McPhail Equine Performance Center; Large Animal Clinical Sciences; Michigan State University College of Veterinary Medicine (1)
Hospital for Sick Children, Toronto, Ontario, Canada (1)
Innovative Genomics Institute, Room 212C 2151 Berkeley Way Berkeley CA 94720 (1)
Mary Anne McPhail Dressage Chair in Equine Sports Medicine Department Large Animal Clinical Sciences College of Veterinary Medicine Michigan State University (1)
Michigan State University (1)
Plant & Soil Science Building 1066 Bogue St, Rm A494E East Lansing, MI 48824 Michigan State University, United States (1)
School of Natural Sciences, Manchester Institute of Biotechnology, The University of Manchester, 131 Princess Street, Manchester, M1 7DN, U.K. (1)
USDA-ARS, Boyce Thompson Institute, Cornell University (1)
Univerisy of California, Berkeley (1)
University Hospital Cologne (1)
University of California San Diego, School of Biological Science, United States (1)
University of Pittsburgh (1)
University of Victoria (1)
Università di Napoli Federico II (1)

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Plastoglobules BN-PAGE experiment (Arabidopsis PGs under unstress and high light conditions)

Proteome comparison of isolated plastoglobules (PGs) from Arabidopsis thaliana (Col-0 ecotype) under unstress (UNS) and high light (HL) stress conditions. For both conditions, PGs were isolated from three independent set of plants each (i.e. three for UNS and three for HL). PGs were isolated from th...

ORGANISM(S): Arabidopsis thaliana (Mouse-ear cress)

2021-04-13 | PXD019735 | Pride

Phenolic Fingerprinting and Bioactivity Profiling of Extracts and Isolated Compounds from Gypothamnium pinifolium Phil.

Not available

S-EPMC9774750 | biostudies-literature

How to Screen and Prevent Metabolic Syndrome in Patients of PCOS Early: Implications From Metabolomics.

Not available

S-EPMC8207510 | biostudies-literature

Quantitative proteomics profiling of protein kinase A substrates - Jurkat clone E6.1

Here we evaluate and explore a peptide-centric antibody generated to selectively enrich peptides containing the cAMP-dependent protein kinase A (PKA) consensus motif. This targeted phospho-proteomic strategy is used to profile temporal quantitative changes of protein PKA substrates in Jurkat T-lymph...

ORGANISM(S): Homo sapiens (Human)

2013-07-25 | PXD000148 | Pride

Targeted approach Dimethyl lableing Immunoprecipiation Phosphoproteomics Lc-msms

Profiling carbonylated proteins in heart and skeletal muscle mitochondria from trained and untrained mice

Understanding the relationship between physical exercise, reactive oxygen species and skeletal muscle modification is important in order to better identify the benefits or the damages that appropriate or inappropriate exercise can induce. Heart and skeletal muscles have a high density of mitochondri...

ORGANISM(S): Rattus norvegicus (Rat)

2022-02-24 | PXD003982 | Pride

Two dimensional gel electrophoresis Tandem mass spectrometry Carbonylation Orbi trap

Asian citrus psyllid proteomics: Shotgun MS/MS analysis of impact of plant host on insect proteome + DIGE analysis of impact of plant host on insect proteome

The Asian citrus psyllid (Diaphorina citri) is a pest of citrus and the primary insect vector of the bacterial pathogen, ‘Candidatus Liberibacter asiaticus’ (CLas), which is associated with citrus greening disease. Variability in CLas titer in insects collected from infected plants has been attribut...

ORGANISM(S): Diaphorina citri (Asian citrus psyllid)

2022-04-27 | PXD011401 | Pride

Asian citrus psyllid Citrus greening Diaphorina citri Insect vector Candidatus liberibacter asiaticus Huanglongbing

Identification of the late endosome LE/MVB proteome related to the endosomal microautophagy eMI activity in the rat liver.

To identify the late endosome LE/MVB proteome related to the endosomal microautophagy eMI activity we purified subcellular organelles including cytosol, late endosomes (LE/MVBs) and lysosomes (CMA+) from the rat liver and performed co-Ip experiment with antibodies directed against the major cellular...

ORGANISM(S): Rattus norvegicus (Rat)

2024-01-26 | PXD046797 | Pride

Cma vs microautophagy hsc-70-co-ip-ms/ms in late endosomes Rat liver Lysosomes and cytosol

Murine kidney glomeruli phosphorylation

Isolated murine kidney glomeruli were lysed in buffer containing 8M urea, and proteins were reduced and alkylated. Proteins were digested with trypsin. After reverse-phase chomatrography, peptides were fractionated using strong cation exchange chromatography. Phosphopeptides were enriched using IMAC...

ORGANISM(S): Mus musculus (Mouse)

2016-05-09 | PXD000266 | Pride

Mouse Podocytes Kidney Glomerular epithelial cell Phosphoproteomics

Equine gluteal muscle LC-MSMS: Thoroughbred

Recurrent exertional rhabdomyolysis (RER) develops in 5-10% of Thoroughbred racehorses. High-stress environments, nervous temperament, and diet influence the presentation of RER. RER-susceptibility is associated with alterations in intramuscular Ca2+ regulation with detrimental effects on mitochondr...

ORGANISM(S): Equus caballus (Horse)

2021-01-07 | PXD020100 | Pride

Rer Muscle Thoroughbred Equine

Top-down on MCF7 for CK8 identification

This study aimed to identify the CK8 proteoforms present in MCF7 cells for comparison with alternative technique.