Peptide interactomics

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Proteomics (123)
Unknown (8)
Genomics (3)
Transcriptomics (1)

Organisms

Acidithiobacillus ferrooxidans ATCC 53993 (123)
Aerococcus urinae NBRC 15544 = CCUG 36881 (123)
Allexis (123)
Arabidopsis thaliana (123)
Cyanophora paradoxa (123)
Ensifer adhaerens (123)
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Streptococcus suis (2)
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pride (123)
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Technology Type

Mass Spectrometry (123)
Affinity purification coupled with mass spectrometry proteomics (58)
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Bottom-up proteomics (23)
Chemical cross-linking coupled with mass spectrometry proteomics (15)
Data-dependent acquisition (14)
SWATH MS (9)
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DiaPASEF (5)
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First Public Date

2026 (1)
2022 (1)
2017 (1)

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bacteria (2)

Modification

2x(15)N labeled L-lysine (1)
4-tetrahydrothiazine-3-carboxylic acid (1)
4x(15)N labeled L-arginine (1)

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2023 (1)
2022 (1)
2021 (1)
2019 (1)
2018 (1)
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Lab affiliation

Proteomics Core Facility and Research Group Proteomics, CEITEC-MU, Masaryk University, Brno, Czech Republic (5)
Basic Immune System of Plants / Protein Mass Spectrometry Max Planck Institute for Plant Breeding Research Carl-von-Linne-Weg 10, 50829 Cologne, Germany (3)
Department of Pediatrics, University of Groningen, University Medical Center Groningen (UMCG), 9713 AV Groningen, The Netherlands (3)
1. Department of Biology, Institute of Molecular Systems Biology, ETH Zurich, 8093 Zurich, Switzerland 2. Faculty of Science, University of Zurich, 8006 Zurich, Switzerland (2)
Chemistry Department, Columbia University in the City of New York (2)
Department of Biology, Institute of Molecular Systems Biology, ETH Zurich, 8093 Zurich, Switzerland Faculty of Science, University of Zurich, 8006 Zurich, Switzerland (2)
Departments of Chemistry, Biological Sciences, Pathology, Microbiology and Immunology, Vanderbilt University (2)
EDyP (2)
Ghent University, Department of Plant Biotechnology and Bioinformatics, Technologiepark 71, 9052 Ghent, Belgium VIB Center for Plant Systems Biology, Technologiepark 71, 9052 Ghent, Belgium (2)
Lab Head (2)
Proteomics program, Novo Nordisk Foundation Center for Protein Research, Faculty of Health and Medical Sciences, University of Copenhagen, Blegdamsvej 3B, 2200 Copenhagen, Denmark (2)
1 Department of Hepatobiliary & Pancreatic Surgery, Zhongnan Hospital of Wuhan University, Wuhan, 430071, PR China. 2 Clinical Medicine Research Center for Minimally Invasive Procedure of Hepatobiliary & Pancreatic Diseases of Hubei Province, Hubei, PR China. 3 Taikang Center for Life and Medical Sciences of Wuhan University (1)
1 VIB-UGent Center for Medical Biotechnology, B9052 Ghent, Belgium; 2 Department of Biomolecular Medicine, Ghent University, B9052 Ghent, Belgium. (1)
1Department of Medicine, University of Minnesota, 420 Delaware Street, SE, Minneapolis, Minnesota 55455, USA (1)
Analytical Biochemistry and Proteomics Unit, Institut Pasteur de Montevideo, Instituto de Investigaciones Biológicas Clemente Estable, Montevideo, Uruguay. (1)
Assistant Professor Departments of Chemistry and Biological Sciences Vanderbilt Unversity (1)
BPMP, CNRS, INRAE, Institut Agro, Univ Montpellier, 34060 Montpellier, France (1)
CNRS, IBMC, FRC1589, Proteomics Core Facility (1)
CRBM institute, UMR5237 CNRS, France (1)
Cellular Protein Biochemistry Lab Technical University of Munich School of Natural Sciences Department of Bioscience (1)
Center for Molecular Medicine, University Medical Center Utrecht, Utrecht University, 3C584 CG Utrecht, The Netherlands (1)
Chiara Guerrera, IR1, HDR Head of the Proteomics Platform SFR Necker INSERM US24 Faculty of Medecine, University of Paris 160 rue de Vaugirard 75015 Paris Tél. : 01 40 61 54 67 (1)
Department of Genome Sciences University of Washington (1)
Department Cellular and Molecular Medicine KU Leuven Belgium (1)
Department of Biochemistry and Biotechnology, University of Thessaly, Biopolis, 41500 Larissa, Greece (1)
Department of Biochemistry and Molecular Biology, VILLUM Center for Bioanalytical Sciences, University of Southern Denmark, Campusvej 55, DK - 5230 Odense M, Denmark (1)
Department of Biological Sciences and Bioengineering, Indian Institute of Technology, Kanpur 208016, India (1)
Department of Biomedical Sciences, Affiliated with The Novo Nordisk Foundation Center for Protein Research, Faculty of Health and Medical Sciences, University of Copenhagen. (1)
Department of Cellular and Molecular Medicine, KU Leuven, Belgium (1)
Department of Chemical Sciences, University of Naples “Federico II”, Naples, Italy CEINGE Advanced Biotechnologies, Naples, Italy (1)

Publication date

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2020 (8)
2015 (5)
2016 (4)
2018 (3)
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pathogen (2)
pathogen:bacterium (2)
xref:PubMed:28066332 (1)
xref:PubMed:27149631 (1)

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A universal peptide matrix interactomics approach to disclose motif dependent protein binding

Protein-protein interactions (PPIs) mediated by intrinsically disordered regions (IDRs) are often based on short linear motifs (SLiM). SLiMs are implicated in signal transduction and gene regulation, yet remain technically laborious and notoriously challenging to study. Here, we present an optimized...

ORGANISM(S): Homo sapiens (Human)

2021-08-11 | PXD027265 | Pride

Development of in planta chemical cross-linking-based quantitative interactomics in Arabidopsis

An in planta chemical cross-linking-based quantitative interactomics (IPQCX-MS) workflow has been developed to investigate in vivo protein-protein interactions and alteration in protein structures in a model organism, Arabidopsis thaliana. A chemical cross-linker, azide-tag-modified disuccinimidyl p...

ORGANISM(S): Arabidopsis thaliana (Mouse-ear cress)

2018-08-14 | PXD008161 | Pride

Arabidopsis thaliana Ecl2 In planta quantitative interactomics Ipqcx-ms In vivo cross-linking 4c proteomic workflow

A Universal Peptide Matrix Interactomics Approach to Disclose Motif-Dependent Protein Binding.

Not available

S-EPMC8453223 | biostudies-literature

MiniTurbo-based interactomics of two plasma membrane-localized SNARE proteins in Marchantia polymorpha

• Marchantia polymorpha is a model liverwort and its overall low genetic redundancy is advantageous for dissecting complex pathways. Proximity-dependent in vivo biotin-labelling methods have emerged as powerful interactomics tools in recent years. However, interactomics studies applying proximity la...

ORGANISM(S): Marchantia polymorpha

2022-04-01 | PXD030429 | Pride

Snare protein Interactomics Membrane-trafficking Miniturbo Proximity labelling Marchantia polymorpha

LC-MS/MS interactomics analysis of Praf2 with timsTOF Pro

LC-MS/MS interactomics analysis of Praf2 using TurboID with timsTOF Pro.

ORGANISM(S): Homo sapiens (Human)

2023-12-20 | PXD029019 | Pride

Turboid Interactomics Praf2 Timstof pro Lc-ms/ms

Integrative structural Interactomics reveals protein organization and structure in a giant virus

Giant viruses are large DNA viruses that infect unicellular and multicellular eukaryotes and form exceptionally large extracellular particles. (Meta)genomics and (meta)transcriptomics have provided insight into their diverse coding repertoire, but many of the proteins remain to be characterized as t...

ORGANISM(S): Melbournevirus Acanthamoeba castellanii str. Neff

2026-05-20 | PXD064933 | Pride

Cross-linking mass spectrometry Bottom-up proteomics Giant virus

LC-MS/MS analysis of peptide methionine sulfoxides stereoisomers

The current dataset contains the raw LC-MS/MS data and the results obtained following analysis of Tyrosinase-derived peptide sulfoxide stereoisomers obtained by a 2D offline High-Performance Liquid Chromatography (HPLC)approach coupled with UV-Vis and Circular Dichroism (CD) detection.

ORGANISM(S): Homo sapiens (Human) Mus musculus (Mouse)

2026-05-04 | PXD077492 | Pride

Stereoisomers Liquid chromatography Mass spectrometry

FlAsH-ID: A short peptide tag for live cell photoproximity labeling

PRJNA1480590 | ENA

An acidic model pro-peptide affects the secondary structure, membrane interactions and antimicrobial activity of a crotalicidin fragment.

Not available

S-EPMC6057973 | biostudies-literature

CIGB-300 Anticancer Peptide Differentially Interacts with CK2 Subunits and Regulates Specific Signaling Mediators in a Highly Sensitive Large Cell Lung Carcinoma Cell Model.

Not available

S-EPMC9856093 | biostudies-literature

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