Sort   by:  
 Page size 
UnknownA Network Module for the Perseus Software for Computational Proteomics Facilitates Proteome Interaction Graph Analysis.
Not available
S-EPMC6578358 | biostudies-literature
ProteomicsBenchmarking differential expression, imputation and quantification methods for proteomics data
Data analysis is a critical part of quantitative proteomics studies in interpreting biological questions. Numerous computational tools including protein quantification, imputation, and differential expression (DE) analysis were generated in the past decade. However, searching optimized tools is stil...
ORGANISM(S): Homo Sapiens (human) Saccharomyces Cerevisiae (baker's Yeast) Drosophila Melanogaster (fruit Fly) 
2022-11-16 | PXD029891 | JPOST Repository
UnknownPerseus plugin "Metis" for metabolic-pathway-centered quantitative multi-omics data analysis for static and time-series experimental designs.
Not available
S-EPMC9046241 | biostudies-literature
ProteomicsMass Dynamics 1.0: A streamlined, web-based environment for analyzing, sharing and integrating Label-Free Data
Label Free Quantification (LFQ) of shotgun proteomics data is a popular and robust method for the characterization of relative protein abundance between samples. Many analytical pipelines exist for the automation of this analysis and some tools exist for the subsequent representation and inspection ...
ORGANISM(S): Homo sapiens (Human) Escherichia coli Saccharomyces cerevisiae (Baker's yeast) 
2022-04-13 | PXD028038 | Pride
Maxquant Benchmarking Label-free quantification Web-based software tool Automated data analysis 
ProteomicsPhosphorylation of Asc1p and Asc1p-dependent phospho-proteome
Phosphorylation of Asc1p and Asc1p-dependent phospho-proteome We determined 1) the phosphorylation sites within the Asc1 protein purified from Saccharomyces cerevisiae via its Strep-tag and 2) the Asc1p-dependent phospho-proteome. 1) Phospho-sites within tryptic peptides of Asc1p were identified usi...
ORGANISM(S): Saccharomyces cerevisiae (Baker's yeast) 
2016-12-13 | PXD003031 | Pride
Lc-msms Asc1p Rack1 Silac Signal transduction Phosphorylation Saccharomyces cerevisiae Translation 
ProteomicsMass spectrometry-based analysis of Mycobacterial single-colony proteome
Here as an attempt to explore bacterial single-colony proteomics, we describe a quantitative mass spectrometry-based protocol to isolate and analyse the proteome of a single mycobacterial colony from 7H10 media. Tryptic peptides are evaluated with high performance liquid chromatography coupled with ...
ORGANISM(S): Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155) 
2021-03-11 | PXD018168 | Pride
Protein extraction Mycobacteria Bacterial proteome Mass spectrometry Single-colony Proteomics 
ProteomicsMass Spectometry Analysis of Inhibition of SOD2-mediated protein degradation
Peptide samples were analysed by a shot-gun approach as described recently (Stieglitz et al., 2022). Raw MS data were processed using Max Quant (version 2.0, Cox and Mann 2008), Perseus software (version 2.0.6.0)(Tyanova et al.,2016), and human entries of uniprot DB. Proteins were stated identified ...
ORGANISM(S): Homo Sapiens (ncbitaxon:9606) 
2024-03-15 | MSV000094325 | MassIVE
ProteomicsPhosphoproteome profile of Human Brain Hemisphere
This project is a continuation of our previous study which resembles Interregional and Inter-hemisphere Proteome of the Human Brain. The current study aims to generate a multiregional phosphoproteome map of 12 neuroanatomical regions from both the hemisphere. The analysis of the raw data was done us...
ORGANISM(S): Homo sapiens (Human) 
2023-03-11 | PXD031188 | Pride
Phosphoproteomics Neuroproteomics Brainprot Brain hemisphere 
ProteomicsMOI analysis of purslane responses to salinity stress - roots
This project constructed a multiomics (proteome, metabolome, and transcriptome) database on the response of purslane (Portulaca oleracea L.) plants to salt stress and subsequently started to employ Single-omics (SOA) and Multi-omics Integration (MOI) strategies to characterize the molecular basis of...
ORGANISM(S): Portulaca oleracea 
2023-06-01 | PXD041628 | Pride
Portulaca oleracea Mult omics integration Salt stress 
ProteomicsMOI analysis of purslane responses to salinity stress - leaf
This project constructed a multiomics (proteome, metabolome, and transcriptome) database on the response of purslane (Portulaca oleracea L.) plants to salt stress and subsequently started to employ Single-omics (SOA) and Multi-omics Integration (MOI) strategies to characterize the molecular basis of...
ORGANISM(S): Portulaca oleracea 
2023-06-01 | PXD041627 | Pride
Portulaca oleracea Salinity stress Mult omics integration 
Sort   by:  
 Page size