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MetabolomicsGNPS liver data files for liver data files for "Improved Annotation of Untargeted Metabolomics Data through Buffer Modifications That Shift Adduct Mass and Intensity"
This is the dataset associated with the following publication: Improved Annotation of Untargeted Metabolomics Data through Buffer Modifications That Shift Adduct Mass and Intensity. Wenyun Lu, Xi Xing, Lin Wang, Li Chen, Sisi Zhang, Melanie R McReynolds, Joshua D Rabinowitz. Anal Chem. 2020 Sep 1;9...
ORGANISM(S): Mus <mouse, Genus> (ncbitaxon:10088) 
2021-03-30 | MSV000087131 | GNPS
TranscriptomicsTranscriptional responses of Saccharomyces cerevisiae to carbon and nitrogen deprivation
Metabolite concentrations can regulate gene expression, which can in turn regulate metabolic activity. The extent to which functionally related transcripts and metabolites show similar patterns of concentration changes, however, remains unestablished. We have therefore measured and analyzed the met...
ORGANISM(S): Saccharomyces cerevisiae 
2009-02-01 | E-GEOD-11754 | biostudies-arrayexpress
TranscriptomicsTranscriptomic and metabolomic profiles of the Plasmodium falciparum developmental cycle
In order to further our understanding of the metabolic network of the malaria parasite, Plasmodium falciparum, we carried out a concurrent transcriptomic and metabolomic study of the parasite's intraerythrocytic developmental cycle. These microarray data were generated to compare the expression lev...
ORGANISM(S): Plasmodium falciparum 
2009-01-23 | E-GEOD-14524 | biostudies-arrayexpress
MetabolomicsGNPS - Data files for manuscript - Selected ion monitoring for orbitrap-based metabolomics
Please open README-data-for-SIM-paper-20240210.doc for details.
ORGANISM(S): Mus Musculus (ncbitaxon:10090) 
2024-02-14 | MSV000094084 | GNPS
TranscriptomicsGene expression profiling of the ethanol tolerant strain HG228 in comparison to its parental strain Escherichia coli MG1655
The goal of this experiment is to identify the pathways that are deregulated as part of an adaptive response to high levels of ethanol in the media. Ethanol tolerant cells (HG228) grown in minimal media plus 1.5% (v/v) ethanol were hybridized against E. coli MG1655 grown under similar conditions. Th...
ORGANISM(S): Escherichia coli str. K-12 substr. MG1655 
2010-06-15 | E-GEOD-21194 | biostudies-arrayexpress
MetabolomicsPseudomonas sp. Strain 273 Incorporates Organofluorine into the Lipid Bilayer during Growth with Fluorinated Alkanes
Anthropogenic organofluorine compounds are recalcitrant, globally distributed, and a human health concern. Although rare, natural processes synthesize fluorinated compounds, and some bacteria have evolved mechanisms to metabolize organofluorine compounds. Pseudomonas sp. strain 273 grows with...
2022-06-06 | MTBLS3893 | MetaboLights
ProteomicsData files for manuscript "Acidic methanol treatment facilitates MALDI-mass spectrometry imaging of energy metabolism"
The MALDI mass spectrometry image files for mouse brain sections under various wash condition in negative mode with NEDC matrix and positive mode with THAP matrix: no wash control, wash with 5 mL chloroform, 5 mL MeOH, and 5mL MeOH + 0.05%FA (Fig 1c, Fig S7, Table S7). The files were converted from ...
ORGANISM(S): Mus Musculus (ncbitaxon:10090) 
2023-08-07 | MSV000092611 | MassIVE
TranscriptomicsQuiescent Fibroblasts Exhibit High Metabolic Activity
Many cells in mammals exist in the state of quiescence, which is characterized by reversible exit from the cell cycle. Quiescent cells are widely reported to exhibit reduced size, nucleotide synthesis, and metabolic activity. Much lower glycolytic rates have been reported in quiescent compared with ...
ORGANISM(S): Homo sapiens 
2012-11-30 | E-GEOD-42612 | biostudies-arrayexpress
ProteomicsOxidative stress induces lysosomal membrane permeabilization and ceramide accumulation in retinal pigment epithelial cells
Oxidative stress has been implicated in the pathogenesis of age-related macular degeneration(AMD), the leading cause of blindness in the elderly, with retinal pigment epithelial (RPE) cells playing a key role. To better understand the cytotoxic mechanisms underlying oxidative stress, we used cell cu...
ORGANISM(S): Mus musculus (Mouse) 
2023-07-19 | PXD043613 | Pride
Oxidative stress Lysosome Age-related macular degeneration Aging Retina 
ProteomicsData files for manuscript "NAD precursors cycle between host tissues and the gut microbiome"
These are the raw mass spec data files for manuscript "NAD precursors cycle between host tissues and the gut microbiome", Karthikeyani Chellappa et al. Check out "Mass Spec data_KEY_Chellappa et al Cell Metabolism_2022.xlsx" for data file arrangement.
ORGANISM(S): Mus Musculus (ncbitaxon:10090) 
2022-10-06 | MSV000090481 | MassIVE
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