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ProteomicsA proteome analysis of freezing tolerance in red clover (Trifolium pratense L.)
Improvement of freezing tolerance of red clover (Trifolium pratense L.) would increase its persistence under cold climate. In this study, we assessed the freezing tolerance and compared the proteome composition of non-acclimated and cold-acclimated plants of two initial cultivars of red clover: Endu...
ORGANISM(S): Trifolium pratense subsp. pratense 
2016-03-15 | PXD003689 | Pride
Red clover  cold acclimation  proteomic analysis  recurrent selection  freezing tolerance  plant abiotic stress. 
UnknownOptimization of iTRAQ labelling coupled to OFFGEL fractionation as a proteomic workflow to the analysis of microsomal proteins of Medicago truncatula roots.
Not available
S-EPMC3442994 | biostudies-literature
ProteomicsPathogenic leptospires modulate protein expression and post-translational modifications in response to mammalian host signals
A large body of work has demonstrated that leptospires regulate and modify gene expression in response to environmental cues, as encountered during disease transmission, including changes in temperature, osmolarity, concentration of iron, the presence of serum, and interaction with macrophages. Howe...
ORGANISM(S): Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130 
2017-08-31 | PXD006995 | Pride
Dige Proteomics Post-translational modifications Spirochetes Leptospira 
MetabolomicsIntegration of time-series meta-omics data reveals how microbial ecosystems respond to disturbance
The development of reliable, mixed-culture biotechnological processes hinges on understanding how microbial ecosystems respond to disturbances. Here we reveal extensive phenotypic plasticity and niche complementarity in oleaginous microbial populations from a biological wastewater treatment plant. W...
2021-04-06 | MTBLS2021 | MetaboLights
ProteomicsIntegrative analysis of two russeted and non-russeted closely related apple varieties during fruit development provides new insights about the cuticle/suberin interplay
Apple russeting is characterized by the deposition of suberin in the inner part of the epidermal cell walls. It develops at the fruit surface when the integrity of the cuticle has been lost. Cutin and wax composition (including triterpene profile) is also affected in russeted skin. In the present w...
ORGANISM(S): Malus domestica 
2022-02-22 | PXD022712 | Pride
Metabolomics Integrative analysis : russeting Conjugated triterpene Lc-ms/ms Suberin Apple skin. 
TranscriptomicsGene expression study after 3 days of cold exposure in a Solanum tuberosum cultivar called Desirée
The molecular response to cold exposure was studied in the leaves of an S. tuberosum clone using cDNA microarray. Differentially expressed genes were classified according to their known or predicted function and their expression ratio as compared to the control. The major changes upon cold exposure ...
ORGANISM(S): Solanum tuberosum 
2011-12-03 | E-GEOD-34110 | biostudies-arrayexpress
TranscriptomicsExpression data from three rice lines (1-control, 1-transgenic and 1-negative segregant) throughout generations and under salt stress
The approval of genetically modified (GM) crops is preceded by years of intensive research to demonstrate safety to humans and environment. We recently showed that in vitro culture stress is the major factor influencing proteomic differences of GM vs. non-GM plants. This made us question the number ...
ORGANISM(S): Oryza sativa 
2016-08-03 | E-GEOD-85113 | biostudies-arrayexpress
ProteomicsAn improved protocol to study the plant cell wall proteome
Cell wall proteins were extracted from alfalfa stems according to a 3-steps extraction procedure using sequentially CaCl2, EGTA and LiCl-complemented buffers. The efficiency of this protocol for extracting cell wall proteins was compared with the 2 previously published methods optimized for alfalfa...
ORGANISM(S): Medicago sativa (Alfalfa) 
2015-04-14 | PXD001927 | Pride
Lc-msms Stem Proteomics 2d-gel electrophoresis Alfalfa Cell wall 
ProteomicsSpecialisation events of fungal metacommunities exposed to a persistent organic pollutant are suggestive of augmented pathogenic potential
The impacts of man-made chemicals, in particular of persistent organic pollutants, are multifactorial as they may affect the integrity of ecosystems, alter biodiversity and hinder the health of most organisms. We have demonstrated that the belowground mycobiota of forest soils acts as a buffer again...
ORGANISM(S): environmental samples <Fungi> 
2018-11-28 | PXD009798 | Pride
Biocide Pcp Secreted proteins Lc-ms Carbon and nitrogen metabolisms Pathogenic Metacommunity 
ProteomicsThe cell wall proteome of Craterostigma plantagineum cell cultures habituated to dichlobenil and isoxaben
The remarkable desiccation tolerance of the vegetative tissues in the resurrection species Craterostigma plantagineum (Hochst.) is favored by its unique cell wall folding mechanism that allows the ordered and reversible shrinking of the cells without damaging neither the cell wall nor the underlying...
ORGANISM(S): Craterostigma plantagineum 
2022-02-17 | PXD026723 | Pride
Habituation Isoxaben Qpcr Proteomics Cell wall Dichlobenil Craterostigma plantagineum 
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