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ProteomicsCUT&Tag Overcomes Biases of ChIP and Establishes Chromatin Patterns for Repetitive Genomic Loci
Determining the genomic localization of chromatin features is an essential aspect of investigating gene expression control, and ChIP-Seq has long been the gold standard technique for interrogating chromatin landscapes. Recently, the development of alternative methods, such as CUT&Tag, have provided ...
ORGANISM(S): Mus musculus (Mouse) 
2025-08-26 | PXD067760 | Pride
Repetitive loci Mouse Ip-ms Chromatin Retrotransposons Chip 
TranscriptomicsMapping of meiotic double-strand break (DSB) sites and DSB factor association near repetitive DNA elements in S. cerevisiae
DNA double strand breaks (DSBs) in repetitive sequences are a potent source of genomic instability, due to the possibility of non-allelic homologous recombination (NAHR). Repetitive sequences are especially at risk during meiosis, when numerous programmed DSBs are introduced into the genome to initi...
ORGANISM(S): Saccharomyces cerevisiae 
2011-08-14 | E-GEOD-30073 | biostudies-arrayexpress
GenomicsRepetitive sequences in parasitic plants
Repetitive sequences in parasitic plants
PRJEB34450 | ENA
UnknownThe Sapap3-/- mouse reconsidered as a comorbid model expressing a spectrum of pathological repetitive behaviours.
Not available
S-EPMC9886949 | biostudies-literature
GenomicsCombinatorial DNA methylation codes at repetitive elements
Combinatorial DNA methylation codes at repetitive elements
PRJNA276976 | ENA
ProteomicsMultiomic analysis identifies involvement of complement-dependent pathways in outcomes after repetitive mild closed head injury
Repetitive mild closed head injury (rmCHI) is a common type of traumatic brain injury and its incidence is increasing, not least due to an increase in the number of sports-related injuries. The underlying neuroimmune mechanisms secondary to trauma that link rmCHI to cognitive decline are not well...
ORGANISM(S): Mus musculus (Mouse) 
2025-12-01 | PXD053772 | Pride
Complement system Repetitive Rnaseq Cytof Traumatic brain injury Closed head Proteomics Microglia 
ProteomicsDefining the chromatin-associated protein landscapes on Trypanosoma brucei repetitive elements using synthetic TALE proteins
Kinetoplastids, such as Trypansoma brucei, are eukaryotes that likely separated from the main lineage at an exceptionally early point in evolution. Consequently, many aspects of kinetoplastid biology differ significantly from other eukaryotic model systems, including yeasts, plants, worms, flies and...
ORGANISM(S): Trypanosoma brucei 
2026-03-01 | PXD063130 | Pride
Kinetochore Chromatin-associated proteins Trypanosoma brucei brucei Repetitive elements 
TranscriptomicsChromatin dynamics and genome-wide profiling of repetitive elements during early mammalian embryogenesis.
We have used repetitive elements, including retrotransposons, as model loci to address how and when heterochromatin forms during development. High throughput RNA-sequencing using a Nano-CAGE protocol throughout early embryogenesis revealed that the expression of repetitive elements is abundant in...
ORGANISM(S): Mus musculus 
2013-01-27 | E-GEOD-39849 | biostudies-arrayexpress
GenomicsRepetitive DNAs of Cycads
There are conserved repetitive DNAs in the genomes of Cycad species
PRJEB20623 | ENA
ProteomicsRepetitive somatic embryogenesis induced cytological and proteomic changes in propagated embryogenic lines of Pseudotsuga menziesii [Mirb.]
Objectives: to characterize and to better understand changes at the cellular and molecular levels, in embryogenic lines in Douglas-fir obtained after repetitive somatic embryogenesis, that could explain improvement of their embryogenic potential : to primary lines, secondary ones showed an increase ...
ORGANISM(S): Pseudotsuga menziesii 
2018-08-15 | PXD008347 | Pride
Plant growth regulators Embryogenesis induction Douglas-fir Somatic embryogenesis 
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