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ProteomicsRNA antisnse puriification of Tau exon 10 pre-mRNA
In this study, we demonstrated the use of the RNA Antisense Purification by Mass Spectrometry (RAP-MS) method to identify proteins involved in specific alternative splicing events. Specifically, we applied the RAP-MS method to identify proteins that interact with the Tau pre-mRNA around its exon 10 ...
ORGANISM(S): Homo sapiens (Human) 
2022-02-16 | PXD023523 | Pride
Tau Splicing Human Rna antisense purification Rap-ms 
TranscriptomicsRho and NusG suppress pervasive antisense transcription in Escherichia coli [RNA-seq].
Despite the prevalence of antisense transcripts in bacterial transcriptomes, little is known about how their synthesis is controlled. We report that a major function of the Escherichia coli termination factor Rho and its co-factor NusG is suppression of ubiquitous antisense transcription genome-wide...
ORGANISM(S): Escherichia coli K-12 
2012-11-01 | E-GEOD-41939 | biostudies-arrayexpress
ProteomicsA KRAS-responsive long non-coding RNA controls microRNA
RNA Antisense Purification and Mass Spectrometry (RAP-MS) was performed to explore the potential RNA binding proteins of lncRNA KIMAT1
ORGANISM(S): Homo sapiens (Human) 
2021-03-01 | PXD024388 | Pride
H1299 Mass spectrometry Non-small cell lung cancer Rna-binding proteins Rna antisense purification Kimat1 
TranscriptomicsSpt6 regulates intragenic and antisense transcription, nucleosome positioning, and histone modifications genome-wide in fission yeast [RNA-seq]
Spt6 is a highly conserved histone chaperone that interacts directly with both RNA polymerase II and histones to regulate gene expression. To gain a comprehensive understanding of the requirements for this critical factor, we have performed genome-wide analyses of transcription, chromatin structure...
ORGANISM(S): Schizosaccharomyces pombe 
2013-10-09 | E-GEOD-49573 | biostudies-arrayexpress
ProteomicsLETR1 (LINC01197) RNA pull-down in human LECs followed by LC-MSMS
Recent studies have revealed the importance of long noncoding RNAs (lncRNAs) as tissue-specific regulators of gene expression. There is ample evidence that distinct types of vasculature undergo tight transcriptional control to preserve their structure, identity, and functions. We determined, for the...
ORGANISM(S): Homo sapiens (Human) 
2020-12-21 | PXD018578 | Pride
Human Lesr2 Lc-msms Linc01197 Lncrna Lecs 
TranscriptomicsClr4/Suv39 and RNA quality control factors cooperate to trigger RNAi and suppress antisense RNA
This SuperSeries is composed of the SubSeries listed below. Refer to individual Series
ORGANISM(S): Schizosaccharomyces pombe 
2011-04-12 | E-GEOD-26999 | biostudies-arrayexpress
ProteomicsTUBA1C: a new potential target of LncRNA EGFR-AS1 promotes gastric cancer progression
Background: The lack of obvious symptoms of early gastric cancer (GC) as well as the absence of sensitive and specific biomarkers results in poor clinical outcomes. Tubulin is currently emerging as important regulators of the microtubule cytoskeleton and thus have a strong potential to be implicated...
ORGANISM(S): Homo sapiens (Human) 
2023-05-10 | PXD040199 | Pride
Lncrna egfr-as1 Tuba1c Gastric cancer Cell cycle 
UnknownIdentification of HnRNPC as a novel Tau exon 10 splicing factor using RNA antisense purification mass spectrometry.
Not available
S-EPMC8786334 | biostudies-literature
ProteomicsProteomic Analysis of RAP (RNA Antisense Purification) isolated RNPs (RiboNucleotide Particles) harboring the novel lncRNA mimi
In neurons, mRNAs and associated RNA-binding proteins assemble into ribonucleoprotein (RNP) granules essential to regulate mRNA trafficking, local translation, and turnover. Dysregulation of RNA-protein condensation can disturb synaptic plasticity. We report that the novel lncRNA mimi is a constitut...
ORGANISM(S): Drosophila melanogaster (Fruit fly) 
2022-10-12 | PXD034457 | Pride
Elav  drosophila  relative lfq (label free quantification) quantitative proteomics Rap rna protein complex isolation  uv crosslinking  fly brain  neurons  lncrna mimi  fne  rbp9 
GenomicsSpt6 regulates intragenic and antisense transcription, nucleosome positioning, and histone modifications genome-wide in fission yeast
This SuperSeries is composed of the SubSeries listed below. Refer to individual Series
ORGANISM(S): Schizosaccharomyces pombe 
2013-10-09 | E-GEOD-49575 | biostudies-arrayexpress
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