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ProteomicsOptimization of an RNA-centric approach searching for RNA-interacting proteins in Arabidopsis thaliana
The number of methods used to study RNA-protein interactions in plants is currently relatively limited. The RNA-centric approach, starting with RNA of interest, brings several difficulties, especially when the RNA belongs to the less abundant RNAs. These methods for identification of RNA-interactin...
ORGANISM(S): Arabidopsis thaliana (Mouse-ear cress) 
2024-05-22 | PXD046839 | Pride
Arabidopsis thaliana Telomerase Rna Rna-centric methods Rna-protein interactions Chirp-ms Telomerase rna Lc-ms/ms 
UnknownCBRPP: a new RNA-centric method to study RNA-protein interactions.
Not available
S-EPMC8594927 | biostudies-literature
UnknownMethods to study RNA-protein interactions.
Not available
S-EPMC6692137 | biostudies-literature
UnknownThe lncRNA myocardial infarction associated transcript-centric competing endogenous RNA network in non-small-cell lung cancer.
Not available
S-EPMC5958945 | biostudies-literature
UnknownOrthogonal proteomics methods to unravel the HOTAIR interactome.
Not available
S-EPMC8795419 | biostudies-literature
ProteomicsChIRP-MS of long non-coding RNA HOTAIR
Accumulating evidence highlights the role of long non-coding RNAs (lncRNA) in cellular homeostasis, and their dysregulation in disease settings. Most lncRNAs function by interacting with proteins or protein complexes. While several orthogonal methods have been developed to identify these proteins, e...
ORGANISM(S): Homo sapiens (Human) 
2022-02-15 | PXD029057 | Pride
Lncrna Hotair Chirp-ms 
ProteomicsRNA-BioID of lncRNA HOTAIR in Flp-In T-REx cells
Accumulating evidence highlights the role of long non-coding RNAs (lncRNA) in cellular homeostasis, and their dysregulation in disease settings. Most lncRNAs function by interacting with proteins or protein complexes. While several orthogonal methods have been developed to identify these proteins, e...
ORGANISM(S): Homo sapiens (Human) 
2022-02-15 | PXD029058 | Pride
Lncrna Hotair Rna-bioid 
UnknownAn RNA-centric historical narrative around the Protein Data Bank.
Not available
S-EPMC8080527 | biostudies-literature
UnknownTREX reveals proteins that bind to specific RNA regions in living cells.
Not available
S-EPMC10927567 | biostudies-literature
UnknownPathway centric analysis for single-cell RNA-seq and spatial transcriptomics data with GSDensity.
Not available
S-EPMC10728201 | biostudies-literature
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