Rpe-1 - OmicsDI

Show results for

Transcriptomics (8347)
Genomics (1322)
Unknown (980)
Proteomics (297)
Metabolomics (83)
Other (15)
Multiomics (3)
Clinical (3)
Models (2)
Methylation profiling (1)

Organisms

Homo sapiens (3474)
Mus musculus (1975)
Saccharomyces cerevisiae (350)
Drosophila melanogaster (314)
Arabidopsis thaliana (288)
Rattus norvegicus (236)
Caenorhabditis elegans (122)
Danio rerio (115)
Schizosaccharomyces pombe (89)
Sus scrofa (86)
Thermus thermophilus HB8 (69)
Escherichia coli (67)
Candida albicans (66)
Gallus gallus (64)
Bos taurus (63)
Salmo salar (53)
Staphylococcus aureus (42)
Apis mellifera (41)
Mycobacterium tuberculosis (37)
Zea mays (35)
Rhizobium leguminosarum (30)
Glycine max (30)
Oncorhynchus mykiss (29)
Rattus rattus (27)
Hordeum vulgare (24)
Triticum aestivum (23)
Escherichia coli str. K-12 substr. MG1655 (23)
Streptomyces coelicolor (22)
Oryza sativa Japonica Group (22)
Pseudomonas aeruginosa (22)

Organisms

Homo sapiens (146)
Mus musculus (38)
Danio rerio (5)
Gallus gallus (3)
Rattus norvegicus (3)
Macaca mulatta (2)
Ostrea edulis (1)
Arabidopsis thaliana (1)

Repository

biostudies-arrayexpress (9083)
EGA (310)
ENA (253)
MassIVE (132)
geo (87)
MetaboLights (83)
pride (72)
jPOST (23)
iProX (14)
PanoramaPublic (13)
LINCS (11)
PAXDB (9)
EVA (6)
GPMDB (4)
ExpressionAtlas (1)
BioModels (1)
Cell Collective (1)
PeptideAtlas (1)

Tissue

Epithelial cell (32)
Cell culture (24)
Retinal pigment epithelial cell (6)
Retinal pigment epithelium cell (6)
Retina (4)
HTERT-RPE1 cell (3)
Retinal pigment epithelium (3)
Choroid (2)
Eye (2)
Retinal pigment epithelium cell line (2)
Primary cell (2)
Kidney (2)
Female Reproductive System (1)
Neuroblast proliferation (1)
Photoreceptor layer of retina (1)
Neural retina (1)
Iris (1)
Choroidal cell of the eye (1)
Ciliary body (1)
Pluripotent stem cell (1)
Embryonic stem cell (1)
Blood plasma (1)
Stem cell (1)
Spleen (1)
Permanent cell line cell (1)
B cell (1)
Monocyte (1)
Blood cell (1)

Disease

Normal (72)
Breast cancer (10)
Neuroblastoma (8)
Colorectal cancer (6)
Chronic lymphocytic leukemia (6)
Melanoma (5)
Reference (4)
Glioblastoma (4)
Adenocarcinoma (4)
Acute myeloid leukemia (4)
Rheumatoid arthritis (3)
Pre-diabetic (3)
Prostate cancer (3)
ACUTE MYELOID LEUKEMIA (2)
Squamous Cell Carcinoma (2)
Primary tumor (2)
Malignant melanoma (2)
Leukemia (2)
Hyperglycaemic (2)
Colon cancer (2)
Colon adenocarcinoma (2)
Chronic myeloid leukemia (2)
Head and neck squamous cell carcinoma (2)
Cancer (2)
Mammary tumor (2)
Acute promyelocytic leukemia (2)
Gastric cancer (2)
No disease (2)
Osteosarcoma (2)
Colorectal adenocarcinoma (2)

Technology Type

Illumina HiSeq 2000 (14)
Illumina HiSeq 2500, ILLUMINA (7)
L1000 (7)
Flow cytometry (7)
ILLUMINA, Illumina HiSeq 2500 (5)
Illumina MiSeq (5)
Fluorescence intensity (4)
Illumina HiSeq 2500 (3)
Illumina Genome Analyzer II (3)
ILLUMINA, Low Pass Whole Genome Sequencing (LP-WGS), Illumina NovaSeq 6000, Illumina Genome Analyzer II, SNP array (1)
Illumina MiSeq, HiSeq X Ten, NextSeq 500, Illumina HiSeq 4000, Illumina HiSeq 2500, ILLUMINA (1)
Illumina CytoSNP 12 bead array, nanostring (1)
ILLUMINA, Illumina HiSeq 1000 (1)
Illumina Multi-EthnicGlobal_A1 (1)
ABI_SOLID, Illumina HiSeq 2000, Illumina 450K, AB 5500xl Genetic Analyzer, AB 5500 Genetic Analyzer, ILLUMINA (1)
ILLUMINA, Illumina HiSeq 4000, Illumina HiSeq 2500 (1)
Illumina HiSeq 2500, ILLUMINA, Illumina MiSeq, NextSeq 500 (1)
Illumina HiSeq 4000, ILLUMINA (1)
Illumina HumanCoreExome-12v1-0_A and HumanCoreExome-24v1-0_A, Illumina Human670-QuadCustom_v1_A (1)
Illumina HumanMethylation 450K (1)
Illumina HiSeq 4000, Illumina HiSeq 2500, ILLUMINA (1)
Affymetrix SNP 6.0 (1)
Illumina HiSeq 2000, Illumina HiSeq 2500 (ILLUMINA), ILLUMINA, Illumina HiSeq 2500 (1)
Illumina HiSeq 2500 (ILLUMINA), Illumina HiSeq 2000, Illumina HiSeq 2500, ILLUMINA (1)
ILLUMINA, Illumina HiSeq 2500, Illumina HiSeq 2000 (1)
Illumina HiSeq 2000, Affymetrix SNP 6.0 (1)
Illumina HiSeq 2000, HiSeq X Ten, ILLUMINA (1)
ILLUMINA, Illumina Genome Analyzer II, Illumina HiSeq 2000 (1)
Illumina HiSeq 2500, Illumina HiSeq 2000 (1)
Illumina HiSeq 2000, ILLUMINA (1)

Instrument Platform

Illumina NovaSeq 6000 (281)
NextSeq 500 (213)
Illumina HiSeq 2500 (185)
Illumina HiSeq 2000 (161)
Illumina HiSeq 4000 (144)
NextSeq 550 (64)
Illumina MiSeq (50)
Scanning hardware (41)
NextSeq 2000 (38)
Illumina NovaSeq X (35)
Illumina Genome Analyzer II (29)
Axon GenePix 4000B scanning hardware (21)
Illumina HiSeq 1500 (21)
GenePix 4000B [Axon Instruments] (19)
GenePix 4000A [Axon Instruments] (18)
Axon GenePix 4000A scanning hardware (17)
Illumina Genome Analyzer IIx (16)
Axon- GenePix4000B (15)
ScanArray Express HT (13)
Illumina HiSeq 3000 (13)
DNBSEQ-G400 (12)
G2565BA DNA microarray scanner [Agilent] (10)
Illumina HiSeq 1000 (10)
ArrayWoRx Biochip Reader [Applied Precision] (9)
Other (9)
418 [Affymetrix] (9)
G2565AA DNA microarray scanner [Agilent] (8)
Variable Atmosphere Incubator (8)
ScanArray Lite [PerkinElmer] (7)
Spectronic Helios Alpha UV-Vis spectrophotometer (7)

Publication Date

2010 (1335)
2013 (1001)
2014 (924)
2012 (877)
2015 (804)
2011 (769)
2016 (553)
2008 (440)
2009 (394)
2007 (270)
2021 (216)
2023 (198)
2022 (196)
2025 (191)
2026 (190)
2024 (180)
2020 (168)
2017 (163)
2005 (160)
2006 (146)
2019 (123)
2018 (123)
2004 (74)
2003 (14)
2002 (6)

UNIPROT ID/AC

C9J9W1_HUMAN (3)
FKB15_HUMAN (3)
CYTC_HUMAN (3)
AT1A1_HUMAN (3)
TPIS_HUMAN (3)
K1C10_HUMAN (3)
G3P_HUMAN (3)
HSPB1_HUMAN (3)
VP13A_HUMAN (3)
GOGA4_HUMAN (3)
FBLN1_HUMAN (3)
SPTB2_HUMAN (3)
LDHB_HUMAN (3)
CUL1_HUMAN (3)
NU155_HUMAN (3)
1433S_HUMAN (3)
ACTB_HUMAN (3)
K2C73_HUMAN (3)
C4BPA_HUMAN (3)
SLTM_HUMAN (3)
CATA_HUMAN (3)
EMC1_HUMAN (3)
BTD_HUMAN (3)
K1C18_HUMAN (3)
BLVRB_HUMAN (3)
APMAP_HUMAN (3)
LG3BP_HUMAN (3)
DSG2_HUMAN (3)
MINP1_HUMAN (3)
CD44_HUMAN (3)

ENSEMBL ID

ENSG00000204131 (1)
ENSG00000147251 (1)
ENSG00000229353 (1)
ENSG00000247315 (1)
ENSG00000170477 (1)

CHEBI ID

CHEBI:15428 (22)
CHEBI:30769 (21)
CHEBI:16919 (21)
CHEBI:15891 (20)
CHEBI:32816 (18)
CHEBI:16958 (17)
CHEBI:16737 (17)
CHEBI:18012 (16)
CHEBI:6650 (16)
CHEBI:17268 (15)
CHEBI:17596 (15)
CHEBI:27897 (15)
CHEBI:22653 (15)
CHEBI:28300 (15)
CHEBI:27266 (15)
CHEBI:16811 (15)
CHEBI:26271 (15)
CHEBI:25017 (15)
CHEBI:25094 (15)
CHEBI:17203 (14)
CHEBI:16865 (14)
CHEBI:18237 (14)
CHEBI:24898 (14)
CHEBI:28044 (14)
CHEBI:16610 (13)
CHEBI:16977 (13)
CHEBI:30794 (13)
CHEBI:16015 (13)
CHEBI:16449 (13)
CHEBI:17822 (13)

Metabolite Name

Creatinine (14)
Creatine (12)
Taurine (11)
Inosine (11)
Myo-inositol (10)
Glycine (10)
Hypoxanthine (10)
L-Glutamine (10)
Citric acid (9)
Tryptophan (9)
Taurine (9)
Creatine (9)
Beta-alanine (9)
Phenylalanine (9)
Isoleucine (9)
Glutamine (9)
Glycine (9)
Valine (8)
L-alanine (8)
Spermidine (8)
Leucine (8)
L-Tyrosine (8)
Tyrosine (8)
Choline (8)
Adenosine (8)
Pyruvate (8)
Glucose (8)
Lactate (8)
ADP (8)
L-Histidine (8)

First Public Date

2025 (43)
2026 (36)
2024 (32)
2023 (30)
2020 (22)
2014 (16)
2022 (15)
2021 (15)
2019 (13)
2018 (10)
2017 (9)
2015 (7)
2016 (3)
2013 (2)

Modelling Approach

Ordinary differential equation model (1)

Study status

Recruiting (2)
Active, not recruiting (1)

Lab affiliation

University of Bristol (8)
Proteomics Core Facility and Research Group Proteomics, CEITEC-MU, Masaryk University, Brno, Czech Republic (6)
Laboratory of Protein Metabolism, Tokyo Metropolitan Institute of Medical Science, Tokyo, Japan (3)
University of Bristol, School of Biochemistry (2)
Institute of Biochemistry II, Faculty of Medicine, Goethe University, Theodor-Stern-Kai 7, D-60590 Frankfurt am Main, Germany (2)
Department of Genome Integrity, Institute of Molecular Genetics of the Czech Academy of Sciences, Prague, Czech Republic (2)
Institute of Molecular Biology (IMB), Chromatin Biology & Proteomics, Mainz, Germany Institute of Developmental Biology and Neurobiology (IDN), Johannes Gutenberg-Universität, Mainz, Germany (1)
Department of Biomedical engineering, Lerner Research Institute, Cleveland Clinic (1)
Tianjin Medical University Eye Hospital, Tianjin Medical University Ophthalmology Research Institute，Tianjin,300384 (1)
Institute of Molecular Medicine and Cell Research, University Freiburg (1)
1Department of Ophthalmology, Stem Cell Ocular Regenerative Medicine Center, Wilmer Eye Institute, The Johns Hopkins University School of Medicine, Baltimore, MD 21205, USA. (1)
The Wellcome-Wolfson Institute for Experimental Medicine, School of Medicine, Dentistry and Biomedical Science, Queen's University Belfast, Belfast, Northern Ireland, UK. (1)
Laboratory of Transcriptional Networks; Department of Cellular, Computational and Integrative Biology (CIBIO), University of Trento, Trento, Italy (1)
Dipartimento di Scienze Chimiche, Farmaceutiche ed Agrarie, Università degli Studi di Ferrara (1)
School of Biochemistry, University of Bristol, UK. (1)
Department of Pathology, Johns Hopkins Medical School, USA (1)
Duke University, Albert Eye Research Institute (1)
Department of Cell Biology, Zhejiang University School of Medicine, Hangzhou, Zhejiang, China (1)
Bioanalytical Mass Spectrometry Group, Max-Planck-Institute for Biophysical Chemistry Department of Clinical Chemistry, University Medical Center Goettingen (1)
Department of Pathology, Microbiology, and Immunology, Vanderbilt University Medical Center; Vanderbilt-Ingram Cancer Center; Vanderbilt Center for Immunobiology, and Vanderbilt Institute for Infection, Immunology, and Inflammation, Nashville, TN, 37232-2363, USA., (1)
Research Unit Protein Science Helmholtz Center Munich Germany (1)
UCD School of Biomolecular and Biomedical Science, University College Dublin, Belfield, Dublin 4, D04 V1W8, Ireland. (1)
Max Planck Institute for Multidisciplinary Sciences, Bioanalytical Mass Spectrometry Group, Göttingen, Germany University Medical Center Göttingen, Department of Clinical Chemistry, Bioanalytics Group, Göttingen, Germany (1)
Department of Infectious Diseases, Immunology and Sexual Health and Department of Medicine, St George Hospital, University of New South Wales, 2 South Street, Kogarah, Sydney, NSW 2217, Australia (1)
Department of Opthalmology, Boston Children's Hospital, Harvard Medical School (1)
Department of Medical Oncology, University of Groningen, University Medical Center Groningen, Groningen, The Netherlands. (1)
Hubrecht Institute-KNAW & University Medical Center Utrecht, Uppsalalaan 8, 3584 CT Utrecht, The Netherlands. (1)
Director UAB Proteomics Facility (1)
Department of Molecular Machines and Signaling, Max Planck Institute of Biochemistry, Martinsried 82152, Germany (1)
Molecular Biology Program, Sloan Kettering Institute, Memorial Sloan Kettering Cancer Center, New York, NY 10065, USA (1)

IsPrivate

False (1)

Modification

4x(15)N labeled L-arginine (2)

Study type

Transcription profiling by array (5169)
RNA-seq of coding RNA (1049)
ChIP-seq (606)
Unknown experiment type (215)
Comparative genomic hybridization by array (206)
ChIP-chip by tiling array (204)
RNA-seq of coding RNA from single cells (192)
Other (170)
RNA-seq of non coding RNA (158)
ChIP-chip by array (137)
Methylation profiling by array (112)
Methylation profiling by high throughput sequencing (95)
Transcription profiling by tiling array (83)
MicroRNA profiling by array (72)
RNA-seq of total RNA (67)
Transcription profiling by RT-PCR (52)
DNA-seq (46)
Cell line - High-throughput sequencing (36)
Proteomic profiling by array (34)
ATAC-seq (27)
Genotyping by array (23)
Animal - High-throughput sequencing (22)
High-throughput sequencing (20)
Spatial transcriptomics by high-throughput sequencing (17)
RIP-seq (16)
Human - High-throughput sequencing (15)
CLIP-seq (15)
MicroRNA profiling by high throughput sequencing (15)
CUT&RUN (14)
Ribo-seq (12)

Release Date

2010 (1349)
2013 (1025)
2014 (946)
2012 (887)
2015 (835)
2011 (777)
2016 (590)
2008 (443)
2009 (400)
2021 (287)
2007 (275)
2025 (271)
2022 (248)
2020 (218)
2023 (215)
2024 (209)
2017 (190)
2019 (183)
2005 (161)
2018 (156)
2026 (153)
2006 (147)
2004 (75)
2003 (13)
2002 (6)

Location

Australia (3)

Previous page
1 / 1109
You're on page 1
page 2
page 3
page 4
page 5
page ...
page 1109
Next page

Sort by:

Relevance

Page size

TMT-MS of PCIF1 siRNAs treated RPE-1 cells

RPE-1 cells treated with the indicated siRNAs for 48 h were subjected to the tandem mass tag quantitative proteomics analysis.Carry out relative protein quantification analysis using tandem mass tag mass spectrometry in RPE-1 cells to investigate the mechanism underlying PCIF1 attenuates ciliation.

ORGANISM(S): Homo sapiens (Human)

2024-03-21 | PXD044338 | Pride

RFX7 DNA binding landscape in RPE-1

PRJNA680773 | ENA

RPE-1 and RPE-1 trisomic AHA p-c and steady state data

We developed a pulse-chase method in where fully SILAC (heavy, medium-heavy and Light) labelled cells were pulsed with Azidohomoalanine (AHA) and then chased for different length of times. In addition, steady state protein levels comparing the RPE- and RPE-1 trisomic cells by standard SILAC labeling...

ORGANISM(S): Homo Sapiens (ncbitaxon:9606)

2017-03-31 | MSV000080831 | MassIVE

Analysis of Golgi stress signalling pathways in RPE-1 cells

The aim of this project is to analyze the effects of Golgi stress induced by treatment with the ionophore nigericin in RPE-1 cells.

ORGANISM(S): Homo sapiens (Human)

2026-04-24 | PXD074941 | Pride

Misfolding Golgi Nigericin Rpe-1

Mad2 knockdown in RPE-1 cells

Single-cell sequencing of RPE-1 cells with Mad2 knockdown

PRJEB33217 | ENA

RFX7, ANKRA2, and p53-regulated transcriptome in RPE-1

PRJNA680778 | ENA

Replication maps of RPE-1 cells grown under various conditions

PRJNA454885 | ENA

Global analysis of genome, transcriptome and proteome reveals the response to aneuploidy in human cells

Extra chromosome copies markedly alter the physiology of eukaryotic cells, but the underlying reasons are not well understood. We created human trisomic and tetrasomic cell lines and determined the quantitative changes in their genome, transcriptome and proteome in comparison to their diploid counte...

ORGANISM(S): Homo sapiens

2012-09-12 | E-GEOD-39768 | biostudies-arrayexpress

CRISPR knockout screening data and RNAsequencing in LINE-1(+) RPE cells

PRJNA491205 | ENA

Characterization of genomic and chromatin landscape of RPE-1 WT cells

PRJNA865654 | ENA

Previous page
1 / 1109
You're on page 1
page 2
page 3
page 4
page 5
page ...
page 1109
Next page

Sort by:

Relevance

Page size

11083 Results

Show results for

Organisms

Organisms

Repository

Tissue

Disease

Technology Type

Instrument Platform

Publication Date

UNIPROT ID/AC

ENSEMBL ID

CHEBI ID

Metabolite Name

First Public Date

Modelling Approach

Study status

Lab affiliation

Tags

IsPrivate

Modification

Study type

Release Date

Location

OmicsDI is part of the ELIXIR infrastructure

Tweets