Sensory epithelium

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Transcriptomics (768)
Unknown (617)
Genomics (235)
Proteomics (21)
Other (5)
Metabolomics (1)

Organisms

Mus musculus (381)
Homo sapiens (172)
Rattus norvegicus (24)
Arabidopsis thaliana (23)
Caenorhabditis elegans (17)
Drosophila melanogaster (14)
Candida albicans (12)
Apis mellifera (11)
Danio rerio (10)
Saccharomyces cerevisiae (9)
Gallus gallus (9)
Colinus virginianus (8)
Mycobacterium tuberculosis (6)
Hordeum vulgare (6)
Cucumis sativus (5)
Macaca fascicularis (5)
Pseudomonas putida (4)
Escherichia coli K-12 (4)
Neisseria gonorrhoeae (3)
Pan troglodytes (3)
Picea glauca (3)
Streptomyces coelicolor (3)
Neisseria meningitidis (3)
Salmonella enterica subsp. enterica serovar Typhimurium (3)
Ovis aries (3)
Triticum aestivum (3)
Pseudomonas aeruginosa (3)
Escherichia coli (3)
Aplysia californica (2)
Treponema denticola (2)

Organisms

Mus musculus (137)
Homo sapiens (9)
Danio rerio (6)
Rattus norvegicus (5)
Gallus gallus (3)
Cavia porcellus (2)
Sus scrofa (2)
Crotalus adamanteus (1)
Protopterus amphibius (1)
Oikopleura dioica (1)
Caenorhabditis elegans (1)
Helicobacter pylori (1)
Ciona intestinalis (1)

Repository

biostudies-arrayexpress (686)
ENA (181)
geo (119)
EGA (23)
pride (10)
MassIVE (7)
PAXDB (3)
iProX (1)
MetaboLights (1)

Tissue

Inner ear (5)
Utricle (4)
Vestibular hair cell (3)
Cochlea (2)
Ear hair cell (2)
Inner ear vestibulum (2)
Macular hair cell (2)
Auditory hair cell (1)
Bone (1)
Otolith organ (1)
Sensory epithelial cell (1)
Sensory hair cell (1)
Supporting cell of cochlea (1)
Supporting cell of vestibular epithelium (1)
Tear (1)

Disease

Normal (6)
Neuroblastoma (3)
Mild cystic fibrosis, pulmonary disease (1)
B. dendrobatidis infection (1)
Non-CF (1)
Parkinson's disease (1)
Diabetes, diabetic peripheral neuropathy (1)
Glioblastoma (1)
5 days post MHV infection (1)
Adenocarcinoma (1)
Not applicable (1)
Healthy (1)
Disease free (1)

Technology Type

Mass Spectrometry (10)
Shotgun proteomics (8)
ILLUMINA, Illumina HiSeq 2500 (2)
Bottom-up proteomics (2)
Illumina HiSeq 2500 (1)
Illumina HiSeq 2000 (1)
Mass spectrometry assay (1)
Data-dependent acquisition (1)
SWATH MS (1)

Instrument Platform

Illumina HiSeq 2500 (23)
Illumina NovaSeq 6000 (23)
NextSeq 500 (22)
Illumina HiSeq 4000 (19)
Illumina HiSeq 2000 (12)
Affymetrix GeneChip Scanner 3000 7G (3)
Chemostat (3)
Illumina MiSeq (3)
NextSeq 550 (3)
Single-Cell Extraction: For enzymatic digestion, pronase (Septomyces argeus, 1 mg/mL) was applied for 25 minutes at room temperature for P0 to P8 datasets. Cells were dissociated and triturated into a single-cell suspension in ACSF supplemented with 1% fetal calf serum (FCS) and DNase (1 µL/10 mL). Trituration was performed using three glass Pasteur pipettes of decreasing diameters. For P30 datasets, enzymatic digestion and cell dissociation were carried out using the Worthington Papain Dissociation System, following the manufacturer’s instructions. Single-Nuclei Extraction: For nuclei isolation, the Hibernate™-E Medium was removed, and 500 µL of chilled 0.1X NP40 Lysis Buffer was added. Tissue was homogenized using a Pellet Pestle (15 strokes) and incubated on ice for 5 minutes. The suspension was pipette-mixed 10 times using a wide-bore pipette tip and incubated for an additional 10 minutes on ice. Following lysis, 500 µL of chilled wash buffer was added, and the mixture was pipette-mixed 5 times using a regular-bore pipette tip. The suspension was filtered through a 30 µm cell strainer into a 50 mL tube to remove debris. The filtered suspension was transferred to a 1.5 mL tube and centrifuged at 950 × g for 10 minutes at 4°C. The supernatant was carefully removed, and the nuclei pellet was retained for downstream analysis. (2)
Affymetrix GeneChip(R) HT Scanner (2)
Agilent 2100 Bioanalyzer (2)
GeneChip Scanner 3000 7G (2)
Agilent G2565AA and G2565BA Microarray Scanner (2)
ArrayWoRx Biochip Reader [Applied Precision] (2)
G2565AA DNA microarray scanner [Agilent] (2)
Other (2)
NextSeq 2000 (2)
HiSeq X Ten (2)
Illumina HiSeq 1500 (2)
Gentle MACS; BD FACS Aria III (1)
ICELL8 MultiSample NanoDispenser (1)
Bravo automated liquid handling robot station (Agilent) (1)
Chromium Next GEM Chip G (1)
10X v3 (1)
Described in protocol (1)
BD FACS ARIA III analyser (1)
10X Genomics Chromium v3.1 with multiplexing kit (1)
Illumina HiSeq 4000 system (1)
10x Genomics Chromium (1)

Publication Date

2010 (88)
2011 (80)
2012 (75)
2014 (66)
2013 (65)
2015 (60)
2008 (52)
2009 (43)
2016 (42)
2025 (35)
2007 (29)
2026 (25)
2020 (24)
2024 (23)
2021 (23)
2022 (22)
2023 (20)
2019 (15)
2017 (15)
2018 (10)
2006 (6)
2004 (4)
2005 (3)

UNIPROT ID/AC

10090.ENSMUSP00000078339 (1)
10090.ENSMUSP00000079727 (1)
10116.ENSRNOP00000008094 (1)
10116.ENSRNOP00000038745 (1)
10116.ENSRNOP00000046711 (1)
10116.ENSRNOP00000054601 (1)
10116.ENSRNOP00000059382 (1)
10116.ENSRNOP00000060273 (1)
10116.ENSRNOP00000066778 (1)
10116.ENSRNOP00000067409 (1)
1433S_MOUSE (1)
2ABA_MOUSE (1)
3HIDH_MOUSE (1)
41_CHICK (1)
9031.ENSGALP00000001352 (1)
9031.ENSGALP00000005115 (1)
9031.ENSGALP00000005340 (1)
9031.ENSGALP00000005497 (1)
9031.ENSGALP00000006909 (1)
9031.ENSGALP00000007662 (1)
9031.ENSGALP00000007667 (1)
9031.ENSGALP00000008279 (1)
9031.ENSGALP00000021815 (1)
9031.ENSGALP00000026707 (1)
9031.ENSGALP00000027141 (1)
9031.ENSGALP00000039755 (1)
9031.ENSGALP00000040189 (1)
9031.ENSGALP00000041846 (1)
9031.ENSGALP00000042511 (1)
9031.ENSGALP00000043018 (1)

Metabolite Name

1-(2,4-difluorobenzoyl)-4-piperidinecarboxylic acid (1)
Cer 18:1;2O/15:0 (1)
HexCer 22:3;2O/17:1;O (1)
PG 4:0_15:0 (1)
SL 17:0;O/16:0;O (1)
MGDG 15:0_16:0 (1)
PG O-24:6_20:5 (1)
PC 16:1_20:5 (1)
Cer 16:0;2O/16:0;(2OH) (1)
PC 13:0_15:0 (1)
PG O-19:2_15:0 (1)
PE 13:0_15:0 (1)
PC O-20:5_3:0 (1)
Cer 15:2;3O/22:1;(2OH) (1)
PC O-16:1_20:4 (1)
LPG O-18:5 (1)
Cer 15:0;2O/14:0 (1)
PG 16:0_21:2 (1)
ST 24:1;O4/18:2 (1)
MGDG O-28:1_20:5 (1)
HexCer 24:0;2O/9:0 (1)
2-(1H-benzimidazol-2-yl)-3-phenylacrylonitrile (1)
PG 16:0_22:6;O (1)
MGDG O-28:1_18:2 (1)
MGDG O-22:4_20:5 (1)
NAGly 15:0/15:0 (1)
LNAPE 17:0/N-2:0 (1)
MGDG O-26:3_20:4 (1)
LPG O-20:3 (1)
SL 18:0;O/16:1;O (1)

First Public Date

2025 (30)
2014 (24)
2020 (21)
2024 (20)
2023 (20)
2026 (18)
2022 (10)
2021 (10)
2017 (10)
2019 (4)
2018 (4)
2015 (4)
2016 (2)
2013 (2)
2012 (1)
2010 (1)

Classification

bacteria (1)

Study type

Transcription profiling by array (457)
RNA-seq of coding RNA (96)
RNA-seq of coding RNA from single cells (32)
Transcription profiling by tiling array (12)
ChIP-seq (10)
ChIP-chip by array (8)
Methylation profiling by high throughput sequencing (8)
Unknown experiment type (7)
ChIP-chip by tiling array (6)
Other (6)
RNA-seq of non coding RNA (5)
RNA-seq of total RNA (4)
Animal - High-throughput sequencing (3)
Cell line - High-throughput sequencing (3)
Comparative genomic hybridization by array (3)
Transcription profiling by SAGE (2)
High-throughput sequencing (2)
RNAi profiling by array (2)
ATAC-seq (2)
Single nucleus RNA sequencing (2)
MicroRNA profiling by array (2)
Cell line - Single-cell sequencing (1)
Differential (1)
Animal - One-color microarray (1)
One-color microarray (1)
Human - High-throughput sequencing (1)
Cell line - One-color microarray (1)
Human - One-color microarray (1)
CLIP-seq (1)
Spatial transcriptomics by high-throughput sequencing (1)

Release Date

2011 (103)
2010 (102)
2014 (93)
2012 (92)
2013 (91)
2015 (80)
2025 (75)
2016 (73)
2009 (60)
2021 (58)
2008 (58)
2020 (57)
2022 (54)
2023 (49)
2017 (48)
2024 (45)
2019 (44)
2018 (43)
2007 (30)
2026 (11)
2006 (10)
2004 (8)
2005 (4)
2000 (4)
2001 (3)
2003 (2)
1998 (2)
2002 (1)
1999 (1)
1997 (1)

Lab affiliation

Oregon Hearing Research Center Oregon Health & Science University Portland, OR, USA (2)
Montpellier Hospital (1)
Oregon Hearing Research Center Oregon Health & Science University Portland OR 97239 (1)
Oregon Hearing Research Center Oregon Health & Science University Portland OR 97239 USA (1)
Oregon Hearing Research Center Oregon Health & Science University Portland OR 97239 USA (1)
Oregon Hearing Research Center Oregon Health & Science University Portland, OR (1)
Otolaryngology (1)
University of California, Los Angeles, USA (1)
University of South Florida Morsani College of Medicine Department of Otolaryngology 12901 Bruce B. Downs Blvd. Otology Laboratory MDC83 Tampa FL 33647 (1)

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Transcription profiling of murine olfactory epithelium during neuronal death and replacement to study adult neurogenesis in the olfactory epithelium

Expression profiling of mRNA abundance in the adult mouse olfactory epithelium during replacement of OSNs forced by the bilateral ablation of the olfactory bulbs. The experiment was done on 6 week old male C57Bl/6 mice. Olfactory epithelium tissue samples were collected on days 1, 5, and 7 after b...

ORGANISM(S): Mus musculus

2007-09-04 | E-GEOD-2437 | biostudies-arrayexpress

Transcription profiling of mouse olfactory epithelium frpm Harlequin mutants compared to littermate controls

Microarray analysis of gene expression in the olfactory epithelium of Harlequin mouse as a model of oxidative-stress induced neurodegeneration of olfactory sensory neurons Experiment Overall Design: Olfactory epithelium from Harlequin mutant mice and littermate control mice was microdissected for RN...

ORGANISM(S): Mus musculus

2008-06-14 | E-GEOD-6485 | biostudies-arrayexpress

Comparison of gene expression profiles in olfactory epithelium from Atf5+/+ and Atf5-/- mice

We have found that the expression pattern of Atf5 is highly restricted to the olfactory system, strongly suggesting that Atf5 is an olfactory sensory neuron-specific transcription factor. To test this possiblity, we compared gene expression profiles in olfactory epithelium (septa and turbinates) fro...

ORGANISM(S): Mus musculus

2012-10-30 | E-GEOD-37609 | biostudies-arrayexpress

Proteome Comparison of Different-Aged Cochlea

Our work describes the application of mass spectrometry-based label-free quantitative proteomics for the identification of differentially expressed proteins between different-aged cochlea. We report proteins exclusively present as well as up- and downregulated in the cochlear sensory epithelium at ...

ORGANISM(S): Mus musculus (Mouse)

2018-08-29 | PXD001973 | Pride

Transcription profiling of olfactory epithelium isolated from wild type and SR-A mutant mice at different time points after bilateral olfactory bulbectomy to understand the temporal gene expression patterns.

Sham and bilateral OBX were performed on wild-type and SR-A mutant mice. Tissue collected 2, 8, 16, and 48 hours following OBX. Expression profiles were determined using Affynetrix MG U74Av2 chips. Experiment Overall Design: olfactory epithelium from 3 wild type 6 week old mice and 3 SR-A 6 week old...

ORGANISM(S): Mus musculus

2007-11-22 | E-GEOD-3455 | biostudies-arrayexpress

Mouse Cochlea Sensory Epithelium Proteome

The mouse cochlear sensory epithelium proteome has been characterized using FASP combined with GELFrEE and off-line SCX- and WAX-based methods follwed by nano LC-MS/MS. In addition, we utilzed single digestion and double digestion approaches using LysC and trypsin endoproteases. MS data files were ...

ORGANISM(S): Mus musculus (Mouse)

2013-06-28 | PXD000231 | Pride

Sensory epithelium Cochlea Fasp Nano lc-ms/ms

Expression data from Emx2 wildtype and knockout olfactory epithelium

Emx2 is a homeobox transcription factor that plays a critical role in development. Olfactory sensory neuron axons from Emx2 knockout mice fail to innervate their target tissue, the olfactory bulb. Homeobox transcription factors may also play an important role in olfactory receptor expression. We use...

ORGANISM(S): Mus musculus

2008-10-15 | E-GEOD-12135 | biostudies-arrayexpress

Transcription profiling of rat nasal respiratory and olfactory epithelium

The nasal epithelium is an important target site for chemically-induced toxicity and carcinogenicity. Human epidemiological investigations and experimental laboratory animal studies show that the nasal olfactory epithelium is selectively damaged by inhalation exposure to several chemicals, includin...

ORGANISM(S): Rattus norvegicus

2008-06-13 | E-GEOD-5019 | biostudies-arrayexpress

Effects of H2be loss of function on gene expression in the main olfactory epithelium (MOE) of 6-month old mice.

We have identified a replication-independent histone variant, Hist2h2be (referred to herein as H2be), which is expressed exclusively by olfactory chemosensory neurons. Levels of H2BE are heterogeneous among olfactory neurons, but stereotyped according to the identity of the co-expressed olfactory re...

ORGANISM(S): Mus musculus

2012-09-01 | E-GEOD-39515 | biostudies-arrayexpress

Genome-wide screen reveals rhythmic regulation of genes involved in odor processing in the olfactory epithelium

Odor discrimination behavior displays circadian fluctuations in mice indicating that mammalian olfactory function is under control of the circadian system. This is further supported by the facts that odor discrimination rhythms depend on the presence of clock genes and that olfactory tissues contain...

ORGANISM(S): Mus musculus

2015-11-04 | E-GEOD-69853 | biostudies-arrayexpress

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1648 Results

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