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ProteomicsTranslationalLandscape_HumanHeart
Here, we analyze the expression of predicted microproteins in human heart tissue and iPSC cardiomyocytes, using shot-gun proteomics and SRM. 4 identified candidates were functionally validated by interactome studies using AP-MS (affinity purification coupled to mass spectrometry). In addition, the i...
ORGANISM(S): Homo sapiens (Human) Rattus norvegicus (Rat) 
2019-06-04 | PXD012593 | Pride
Shot gun Heart tissue Targeted proteomics 
ProteomicsInvestigating the autotrophic and mixotrophic metabolism of an anammox bacterium
Anaerobic ammonium oxidizing (anammox) bacteria mediate a key step in the biogeochemical nitrogen cycle and have been applied worldwide for the energy-efficient removal of nitrogen from wastewater. However, outside their core energy metabolism, little is known about the metabolic networks driving an...
ORGANISM(S): Candidatus Kuenenia stuttgartiensis 
2021-07-30 | PXD016171 | Pride
Metabolism Anammox Shot-gun proteomics Microbial proteomics 
ProteomicsBarley seed malting analysis - Temporal analyses of barley malting stages using shot-gun proteomics
Quantitative comparison of proteomes generated during germination stages of Barley seeds
ORGANISM(S): Hordeum vulgare (Barley) 
2018-07-05 | PXD009103 | Pride
Barley Seed Germination Lc-ms/ms 
ProteomicsProfiling of the proteome of peripheral blood mononuclear cells of subjects diagnosed with primary open angle glaucoma
This study reports the first characterization of the intracellular proteome of peripheral blood mononuclear cells (PBMC) isolated from subjects diagnosed with primary open angle glaucoma (POAG)by shot-gun proteomics. Glaucoma is a chronic optic neuropathy and among the first causes of irreversible...
ORGANISM(S): Homo sapiens (Human) 
2025-09-22 | PXD059976 | Pride
Glaucoma Peripheral blood mononuclear cells Shot gun proteomics Immune system 
UnknownShot-Gun Proteomic Analysis on Roots of Arabidopsis pldα1 Mutants Suggesting the Involvement of PLDα1 in Mitochondrial Protein Import, Vesicular Trafficking and Glucosinolate Biosynthesis.
Not available
S-EPMC6337374 | biostudies-literature
ProteomicsLarge-scale discovery proteomics - Nitrospira moscoviensis
A large-scale discovery proteomics experiment was performed on biomass of Nitrospira moscoviensis (Lab head, Dr. Sebastian Lücker, RU, NL). The soluble protein fraction was analysed following high pH reverse-phase peptide fractionation. The insoluble membrane fraction was solubilised by an optimised...
ORGANISM(S): Nitrospira moscoviensis 
2021-07-22 | PXD019583 | Pride
Qe plus Nitrospira moscoviensis Shot-gun proteomics 
ProteomicsDesign and experimental evaluation of a minimal, innocuous watermarking strategy to distinguish near-identical DNA and RNA sequences
F. Boonekamp et al., (2019) describe an innocuous watermarking strategy for coding regions that enables the discrimination of DNA and mRNA by sequencing through a k-mer approach and facilitates selective editing of watermarked and non-watermarked sequences. Shot-gun proteomics (LFQ) was performed on...
ORGANISM(S): Saccharomyces cerevisiae (Baker's yeast) 
2020-09-21 | PXD016914 | Pride
Yeast Lfq Proteomics 
ProteomicsDrosophila melanogaster Xkr interacting proteins shotgun LC-MS/MS data
Drosophila Xkr, the Xkr8 homolog, exhibits scramblase activity to mediate PS exposure in apoptosis in a caspase-independent manner, but the mechanism is unclear. So we expressed Xkr-FLAG in Drosophila S2 cells, using shot-gun LC-MS/MS to identify proteins interacting with Xkr.
ORGANISM(S): Drosophila melanogaster (Fruit fly) 
2026-09-23 | PXD058895 | Pride
ProteomicsPilot study on the field-grown pollen proteome from maize W22.
This was a pilot project carried out by Dr Wojciech Majeran to determine the maize pollen proteome harvested from field-grown W22 (T43) plants in plots on the Musgrave Research Farm (Cornell CALS) in Aurora (NY). To enhance proteome coverage, the pollen were separated into soluble and membrane boun...
ORGANISM(S): Zea mays (Maize) 
2023-09-11 | PXD045274 | Pride
Pollen Shot-gun Mass spectrometry Maize Pollen soluble and pollen membrane proteomes. Proteomics 
ProteomicsDietary protein in vitro digest (LC-MS)
16 dietary protein preparations were digested according to a standardized invitro digestion (InfoGest) protocol, simulating gastrointestinal digestion. Resulting oligopeptide mixtures were subsequently analyzed by UPLC-MS using DDA shot-gun detection. Peak intensity data from MS1 spectra were obtain...
ORGANISM(S): Bos taurus (Bovine) Pisum sativum (Garden pea) Solanum tuberosum (Potato) Zea mays (Maize) Triticum aestivum (Wheat) Saccharomyces cerevisiae (Baker's yeast) Gallus gallus (Chicken) 
2021-09-09 | PXD021577 | Pride
Dietary protein  in vitro digest  lc-ms  de novo 
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