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NGS of West Nile viruses replicating in the presence of SLA RNAs or tRNA controls

West Nile infectious clones were transfected with either SLA or tRNA. Viral RNA was extracted on days 3 and 4 post-transfection for sequencing. Shannon entropy and single nucleotide variants were analyzed to compare the samples.

ORGANISM(S): West Nile virus

2025-07-15 | E-MTAB-14867 | biostudies-arrayexpress

Transcription profiling of hippocampus samples from the Rattus norvegicus Syracuse High Avoidance (SHA) and Syracuse Low Avoidance (SLA) strains

Comparisons of hippocampi of Syracuse High Avoidance (SHA) and Syracuse Low Avoidance (SLA) learning rats

ORGANISM(S): Rattus norvegicus

2007-10-12 | E-GEOD-932 | biostudies-arrayexpress

Transcriptome analysis of porcine PMBCs after stimulation by LPS or PMA/ionomycin using SLA-RI/NRSP8-13K chip

Background: During the past 25 years, selection of production traits highly increased pig production but diseases have emerged that may cause economic loss of extreme importance. Designing sustainable animal production that better balances productivity with resistance to disease is a major concern a...

ORGANISM(S): Sus scrofa

2010-01-30 | E-GEOD-17320 | biostudies-arrayexpress

HDX-MS Studies of Dengue Virus Serotype 2 NS5 (DENV2 NS5) and Stem Loop A (SLA) Interactions

The project employs HDX-MS to study the conformational dynamics of DENV2 NS5 in its apo form and in complex with the viral promoter RNA, Stem Loop A (SLA). The conformational dynamics of the RdRp domain of DENV2 NS5 (NS5-RdRp) in its apo form and in complex with SLA was also studied.

ORGANISM(S): Escherichia coli

2025-05-07 | PXD058297 | Pride