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ProteomicsAddressing the challenge of soil metaproteome complexity by improving metaproteome depth of coverage
Investigation of LC-MS/MS approaches to improve soil metaproteome depth of coverage for a Kansas prairie native soil
ORGANISM(S): environmental samples 
2018-11-21 | PXD008895 | Pride
Metaproteome Soil 
ProteomicsSoil Metaproteome - proteome data analysis
Phosphorus (P) limitation will play a key role in the productivity of agriculture in the coming decades. Struvite is an ammonium magnesium phosphate mineral that can be recovered from wastewater-treatment plants and can be considered as an alternative source of P. However, the impact of struvite on ...
ORGANISM(S): Escherichia coli 
2019-03-13 | PXD009595 | Pride
Lc-ms Agriculture Soil microbiome 
ProteomicsSoil metaproteome and pH effects
Soil microorganisms act as gatekeepers for soil-atmosphere carbon exchange by balancing the accumulation and release of soil organic matter. However, poor understanding of the mechanisms responsible hinders the development of effective land management strategies to enhance soil carbon storage. Here ...
ORGANISM(S): Escherichia coli 
2018-07-26 | PXD010526 | Pride
Soil metaproteome Ph effects Land use Lc-ms/ms 
ProteomicsMetaproteomic datasets of wheat rhizosphere from saline and non-saline soils
We present metaproteome data from wheat rhizosphere from saline and non-saline soil. For collection and acquisition of metaproteome from wheat rhizosphere under saline and normal conditions, a survey was conducted in regions of Haryana, India. Samples from 65 days old plants (wheat var HD2967) were ...
ORGANISM(S): rhizosphere soil bacteria ensemble 
2024-01-08 | PXD015387 | Pride
Lc msms Normal soil Saline soil Soil microbial proteins Microbiota Metaproteome Wheat rhizosphere 
ProteomicsMetaproteomic data of maize rhizosphere
We present metaproteome data from maize rhizosphere from sodic soil. Isolation of proteome from maize rhizosphere collected from Experimental Farm, ICAR-IISS, Mau, India was done with the standardized protocol at our laboratory and metaproteome analysis was done with the standardized pipepline. In ...
ORGANISM(S): rhizosphere soil bacteria ensemble 
2019-10-08 | PXD014519 | Pride
Lc msms Soil microbial proteins Microbiota Metaproteome Maize rhizosphere 
ProteomicsMetaproteome analysis of different soil types
Metaproteome analysis of a forest soil and a potting soil. Different protein extraction methods were compared to investigate protein extraction efficiency and compatibility with sample downstream processing.
ORGANISM(S): unidentified environmental samples 
2015-03-26 | PRD000542 | Pride
ProteomicsSoil metaproteomics using DNA RNA protein co-extraction method
Soil is an inherently complex matrix and as such, we believe when performing culture-independent microbial community analyses using the 'omics' suite of tools, all biomolecules investigated should be co-extracted from the same biological sample. To this end, we developed a robust, cost-effective DNA...
ORGANISM(S): environmental samples 
2019-07-15 | PXD007077 | Pride
Soil metaproteomics lc ms/ms 
ProteomicsStructure and function of the topsoil metaproteome across global biomes: a survey of the topsoil metaproteome across global biomes
Herein, we evaluated the changes in biological functions in soils across global biomes through the identification and quantification of proteins. This knowledge is essential to provide one stepforward in soil microbial ecology in order to decipher the cellular and molecular mechanisms employed by so...
ORGANISM(S): Escherichia coli 
2023-02-24 | PXD018448 | Pride
Survey Soil metaproteomics Lc-ms Topsoil Global microbiomes 
ProteomicsSoil Metaproteome of two Canga associated sites
Soil metaproteome of two sites near mining operation in Southern Brazil
ORGANISM(S): Fungi (ncbitaxon:4751) Magnoliophyta (ncbitaxon:3398) Bacteria (ncbitaxon:2) 
2019-03-12 | MSV000083557 | MassIVE
ProteomicsVitis vinifera rhizosphere characterization: a metaproteome approach
Rhizosphere is a complex system of interactions between plant roots, bacteria, fungi and animals, where the release of plant root exudates stimulates bacterial density and diversity. However, the majority of the bacteria in soil results to be unculturable but active. The aim of the present work was ...
ORGANISM(S): Bacteria 
2022-02-28 | PXD007670 | Pride
Vineyard Rhizosphere metaproteome 
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