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ProteomicsProjDIA: Fragment-Bin Projection Scoring and Calibrated Confidence for Direct Infusion DIA Proteomics
Direct-infusion shotgun proteome analysis (DI-SPA) increases throughput by removing liquid chromatography, but the resulting DIA spectra are highly multiplexed and difficult to interpret. This dataset was generated to evaluate ProjDIA, a computational workflow for direct-infusion DIA proteomics. Pro...
ORGANISM(S): Homo sapiens (Human) 
2026-04-02 | PXD076477 | Pride
Mcf7 Proteomics Projdia Direct infusion Dia Species entrapment Di-spa Hela Label-free quantification 
UnknownCinnamaldehyde and Phenyl Ethyl Alcohol promote the entrapment of intermediate species of HEWL, as revealed by structural, kinetics and thermal stability studies.
Not available
S-EPMC6901479 | biostudies-literature
UnknownA Hierarchical Metal-Organic Framework Intensifying ROS Catalytic Activity and Bacterial Entrapment for Engineering Self-Antimicrobial Mask.
Not available
S-EPMC11809350 | biostudies-literature
ProteomicsUnifying the analysis of bottom-up proteomics data with CHIMERYS
Proteomic workflows generate vastly complex peptide mixtures that are analyzed by liquid chromatography–tandem mass spectrometry, creating thousands of spectra, most of which are chimeric and contain fragment ions from more than one peptide. Because of differences in data acquisition strategies such...
ORGANISM(S): Arabidopsis thaliana (Mouse-ear cress) Homo sapiens (Human) Mus musculus (Mouse) Halobacterium salinarum Escherichia coli Saccharomyces cerevisiae (Baker's yeast) 
2025-04-16 | PXD053241 | Pride
Dia Human Fdr Chimerys Entrapment Multi-species Lc-msms Dda 
ProteomicsBenchmarking CHIMERYS using Wide Window Acquisition and Classical Narrow Isolation Window Data Dependent Acquisition
A comprehensive proteome map is essential to elucidate molecular pathways and protein functions. Although great improvements in sample preparation, instrumentation and data analysis already yield-ed impressive results, current studies suffer from a limited proteomic depth and dynamic range there-for...
ORGANISM(S): Homo sapiens (Human) Mus musculus (Mouse) Escherichia coli Saccharomyces cerevisiae (Baker's yeast) 
2024-02-13 | PXD045500 | Pride
E. coli Wide window acquisition Yeast Direct injection Micropillar array chromatography Vanquish neo Hela Orbitrap exploris 480 Single cells Trap-and-elute 
TranscriptomicsEffects of nitric oxide on Salmonella adapted at pH 4.4
Reactive nitrogen species (RNS) derived from dietary and salivary inorganic nitrates (NO3-) foment innate host defenses associated with the acidity of the stomach. The mechanisms by which these reactive species exert antibiotic activity in the gastric lumen are, however, poorly understood. To iden...
ORGANISM(S): Salmonella enterica subsp. enterica serovar Typhimurium 
2010-05-26 | E-GEOD-9398 | biostudies-arrayexpress
UnknownChemical entrapment and killing of insects by bacteria.
Not available
S-EPMC7490686 | biostudies-literature
UnknownA nanotrap infused ultrathin hybrid composite material for rapid and highly selective entrapment of <sup>99</sup>TcO<sub>4</sub>.
Not available
S-EPMC11485004 | biostudies-literature
UnknownPotassium niobate nanolamina: a promising adsorbent for entrapment of radioactive cations from water.
Not available
S-EPMC4255181 | biostudies-literature
UnknownHydrogen-bonded organic framework biomimetic entrapment allowing non-native biocatalytic activity in enzyme.
Not available
S-EPMC9381776 | biostudies-literature
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