Sps-ftms3 - OmicsDI

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Proteomics (75)

Organisms

Schizophyllum commune H4-8 (75)
Mycobacterium tuberculosis SP7 (75)
Mycobacterium tuberculosis SP10 (75)
Mycobacterium tuberculosis SP13 (75)
Mycobacterium tuberculosis SP22 (75)
Chlamydomonas reinhardtii (75)
Enterococcus mundtii CRL35 (75)
Oncorhynchus tshawytscha (75)
Pseudomonas canadensis (75)
Influenza A virus (A/California/04/2009(H1N1)) (75)
Pseudomonas aeruginosa PAO1H2O (75)
Human alphaherpesvirus 1 strain 17 (75)
Mycobacterium tuberculosis SP1 (75)
Marchantia polymorpha subsp. ruderalis (75)
Methylocystis sp. (75)
Exiguobacterium sp. SH31 (75)
Palaemonetes sp. common grass shrimp associated circular virus (75)
Amaranthus tricolor (75)
Spirochaeta sp. ELBA (75)
Acipenser sturio (75)
Clavibacter nebraskensis NCPPB 2581 (75)
Porites pukoensis (75)
Porphyromonas gingivalis (75)
Leishmania tarentolae (75)
Porphyromonas gingivalis W83 (75)
Human betaherpesvirus 5 (75)
Bothrops insularis (75)
Bothrops jararaca (75)
Bothrops jararacussu (75)
Bothrops cotiara (75)

Repository

pride (75)

Tissue

Cell culture (24)
Epithelial cell (13)
Brain (10)
Blood (8)
Macrophage (7)
Neutrophil (4)
Blood cell (4)
Primary cell (3)
Permanent cell line cell (3)
Reticulocyte (2)
Leukocyte (2)
HeLa cell (2)
Uterine endometrium (2)
Monocyte (2)
Cell suspension culture (2)
Lung (2)
Placenta (2)
Kidney (2)
Astrocyte of the forebrain (1)
Myelocytic leukemia cell line (1)
Endometrium epithelium (1)
Granulocyte (1)
Neurohypophysis (1)
Cell cortex (1)
Culture medium (1)
Myeloid leukocyte (1)
Astrocyte of the cerebral cortex (1)
Head (1)
Neuron of cerebral cortex (1)
Bark (1)

Disease

Chronic myeloid leukemia (2)
Disease free (2)
Acute leukemia (2)
Susceptibility to dengue virus (1)
Dengue shock syndrome (1)
Dengue hemorrhagic fever (1)
Oculocutaneous albinism type VII (1)
Barth syndrome (1)
Dengue disease (1)
Plasmodium falciparum malaria (1)
Burkitt lymphoma (1)
Bacterial sepsis (1)
Lymphoma (1)
Acute myeloid leukemia (1)
Autism spectrum disorder (1)
Brain cancer (1)

Technology Type

Mass Spectrometry (75)
Shotgun proteomics (38)
Bottom-up proteomics (26)
Data-dependent acquisition (16)
Affinity purification coupled with mass spectrometry proteomics (4)
Gel-based experiment (2)
Top-down proteomics (2)
All-ion fragmentation (1)

Publication Date

2026 (15)
2023 (14)
2025 (12)
2021 (10)
2018 (8)
2024 (6)
2022 (4)
2019 (3)
2017 (2)
2020 (1)

Lab affiliation

School of Biochemistry, Faculty of Life Sciences, University of Bristol,UK (6)
University of Bristol (5)
Professor of Cell Biology and NHSBT Principal Investigator,School of Biochemistry,University of Bristol (3)
Department of Biochemistry, Biomedical Sciences Building, University of Bristol, Bristol, United Kingdom (3)
Foetal Exposure Group School of Clinical Sciences University of Bristol United Kingdom (2)
Department of Systems Pharmacology & Translational Therapeutics, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA 19104, USA (2)
Department of Systems Pharmacology & Translational Therapeutics, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA 19104, USA. (2)
School of Biochemistry, Biomedical Sciences Building, University Walk, University of Bristol, BS8 1TD, U.K. (2)
Newcastle University Biosciences Institute, Newcastle University, Newcastle upon Tyne, UK (1)
School of Physiology, Pharmacology and Neuroscience Faculty of Life sciences University of Bristol (1)
Associate Professor in Molecular Reproductive Biology, Discovery and Translational Sciences Department, Leeds Institute of Cardiovascular and Metabolic Medicine (LICAMM), Faculty of Medicine and Health Sciences, University of Leeds, UK (1)
School of Cellular and Molecular Medicine University of Bristol Biomedical Sciences Building University Walk Bristol BS8 1TD, UK (1)
Cullen Laboratory School of Biochemistry University of Bristol, UK (1)
Cell Biology, Harvard Medical School, Boston, MA, USA (1)
School of Biochemistry and Biomedical Sciences, Faculty of Health and Life Sciences, University of Bristol, UK (1)
Cellular & Molecular Medicine, University of Bristol, United Kingdom (1)
Bristol Dental School, University of Bristol (1)
Genetic and Molecular Basis of Neurodevelopmental Disorders, IST Austria, Klosterneuburg, Lower Austria, Austria (1)
Inst Cardiovasc & Metabolic Med (LICAMM), University of Leeds, Leeds, United Kingdom (1)
Professor of Cell Biology and NHSBT Principal Investigator, School of Biochemistry, University of Bristol (1)
Professor of Cell Biology and NHSBT Principal Investigator, School of Biochemistry, Unitversity of Bristol (1)
School of Physiology, Pharmacology and Neuroscience University of Bristol Biomedical Sciences Building University Walk Bristol - BS8 1TDE United Kingdom (1)
BioActivEx Research Group, Department of Public Health and Sport Sciences, University of Exeter, UK. (1)
Department of Biochemistry & Biomedicine, School of Life Sciences, University of Sussex (1)
Molecular Neuroendocrinology Group, Translational Health Sciences, Bristol Medical School, University of Bristol (1)
School of Biochemistry, University of Bristol, Bristol, United Kingdom (1)
School of Cellular and Molecular Medicine, University of Bristol (1)
Molecular Neuroendocrinology Research Group, Bristol Medical School: Translational Health Sciences, University of Bristol, Dorothy Hodgkin Building, Bristol, United Kingdom (1)
Department of Child Health, School of Medicine, Cardiff University, UK (1)
School of Life Sciences University of Sussex Brighton BN1 9QG UK (1)

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DNAAF9 interactome from human airway epithelial cells

Biogenesis of motile cilia in multiciliated cells (MCCs) is coupled to large-scale biosynthesis of force generating dynein motors. Shulin inhibits pre-assembled ODA (outer dynein arm) motors by packaging them into a closed conformation preventing aberrant off-target interactions with cellular microt...

ORGANISM(S): Homo sapiens (Human)

2025-07-31 | PXD052722 | Pride

Proteome-wide evaluation of two common protein quantification methods

Proteomics experiments commonly aim to estimate and detect differential abundance across all expressed proteins. Within this experimental design, some of the most challenging measurements are small fold changes for lower abundance proteins. While bottom-up proteomics methods are approaching comprehe...

ORGANISM(S): Homo sapiens (Human) Saccharomyces cerevisiae (Baker's yeast)

2018-04-05 | PXD007683 | Pride

Tmt Lfq Maxquant

Alkaloids modify the poison frog proteome

Poison frogs sequester chemical defenses from their diet of leaf litter arthropods for defense against predation. Little is known about the physiological adaptations that confer this unusual bioaccumulation ability. We conducted an alkaloid-feeding experiment with the Diablito poison frog (Oophaga s...

ORGANISM(S): Oophaga sylvatica

2021-01-25 | PXD021216 | Pride

Complement system Toxin Skin Gut Liver Saxiphilin Cytochrome p450s Poison dart frog

Early NK-cell and T-cell dysfunction marks progression to severe dengue in patients with obesity and healthy weight

Dengue is a mosquito-borne virus infection affecting half of the world’s population for which therapies are lacking. The role of T and NK-cells in protection/immunopathogenesis remains unclear for dengue for dengue. We performed a longitudinal phenotypic, functional and transcriptional analyses of T...

ORGANISM(S): Homo sapiens (Human)

2025-05-21 | PXD061694 | Pride

Dengue Cd4+ t-cells Cd8+ t-cells Co-inhibitory receptors Cytotoxic cells Severe dengue biomarkers Nk-cells Type-i ifn

NanoLC-MSMS TMT whole cell comparison of ex vivo derived macrophage subtypes.

Triplicate samples of donor matched ex vivo generated macrophage subtypes M1, M2a, M2c compared against the M0 control analysed using TMT-based 11plex quantitative proteomics.

ORGANISM(S): Homo sapiens (Human)

2023-09-04 | PXD032801 | Pride

Human Macrophage Polarisation

SMS TMT surfaceome comparison of ex vivo derived M1 macrophages treated with dexamethasone

Triplicate samples of donor matched ex vivo generated macrophage subtype M1 cells treated with and without dexamethasone compared against the M0 control analysed using TMT-based 11plex quantitative proteomics.

ORGANISM(S): Homo sapiens (Human)

2023-09-04 | PXD032967 | Pride

Dexamethasone Macrophage

SMS TMT surfaceome comparison of ex vivo derived M1 macrophages treated with dexamethasone

ORGANISM(S): Homo sapiens (Human)

2023-09-04 | PXD032966 | Pride

Dexamethasone Macrophage

NanoLC-MSMS TMT surfaceome comparison of ex vivo derived macrophage subtypes.

Triplicate samples of donor matched ex vivo generated macrophage subtypes M1, M2a, M2c compared against the M0 control analysed using TMT-based 11plex quantitative proteomics.

ORGANISM(S): Homo sapiens (Human)

2023-09-04 | PXD032823 | Pride

Human Macrophage Polarisation

SMS TMT surfaceome comparison of ex vivo derived M1 macrophages treated with dexamethasone

ORGANISM(S): Homo sapiens (Human)

2023-09-04 | PXD032905 | Pride

Dexamethasone Macrophage

Translational and post-translational dynamics in a model peptidergic system

The cell bodies of hypothalamic magnocellular neurones are densely packed in the hypothalamic supraoptic nucleus whereas their axons project to the anatomically discrete posterior pituitary gland. We have taken advantage of this unique anatomical structure to establish proteome and phosphoproteome d...

ORGANISM(S): Rattus norvegicus (Rat)

2023-04-12 | PXD040870 | Pride

Cytoskeleton Phosphoproteome Posterior pituitary Supraoptic nucleus Proteome

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75 Results

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