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ProteomicsStreptococcus pneumoniae biomarker identification by surface shaving and bottom-up mass spectrometry-based proteomics
In this study, genomics- and proteomics-based approaches were used for the identification of Streptococcus pneumoniae potential biomarkers for diagnostics and prospective targets for treatment. Through a Pan-genome analyses 11 strains from the CCUG demonstrating genetic variability within the speci...
ORGANISM(S): Streptococcus pneumoniae Bacteria 
2025-12-15 | PXD063486 | Pride
Proteomics Surface-shaving Bottom-up mass spectrometry Lpi Biomarkers Streptococcus pneumoniae 
ProteomicsTryptic shaving of Staphylococcus aureus
Surface proteins of Gram-positive bacteria are critical for adherence to host tissues, evasion of the immune system, and interaction with the environment. They can be utilized as biomarkers in diagnostics, for vaccine development, and as therapeutic targets due to their accessibility and role in pat...
ORGANISM(S): Bacteria Staphylococcus aureus 
2025-09-15 | PXD061994 | Pride
Diagnostic peptides Surface proteins Staphylococcus aureus Tryptic shaving Proteomics 
ProteomicsGardnerella vaginalis cell surface shaving
Study of Gardnerella vaginalis cell surface proteome
ORGANISM(S): Gardnerella vaginalis 
2018-06-06 | PXD003192 | Pride
Gardnerella vaginalis surface proteome 
ProteomicsMycobacterium tuberculosis surface proteomics
Surface shaving Mtb using two concentrations of trypsin: 0.4 ug/mL and 0.05 ug/mL. Both bacteria and supernatant without the bacteria were subject to trypsinization, to allow for a ratio between samples to identify candidate surface proteins.
ORGANISM(S): Mycobacterium tuberculosis H37Rv 
2024-12-11 | PXD052936 | Pride
Surface Proteomics Mtb 
ProteomicsGrowth condition-dependent cell surface proteome analysis of Enterococcus faecium
Using a proteolytic shaving approach we identified differentially expressed surface exposed proteins of E. faecium cells after growth in different conditions.
ORGANISM(S): Enterococcus Faecium E1162 (ncbitaxon:535206) 
2015-07-07 | MSV000079184 | MassIVE
ProteomicsWithin-host adaptive phenotypic responses of bovine Staphylococcus aureus
The Gram-positive bacterium S. aureus is one of the most common causes of contagious bovine mastitis. A predominant S. aureus clone persists within its host over a long period. In the present study, we compared the surface proteome of two isolates, collected from a naturally infected dairy cow with ...
ORGANISM(S): Staphylococcus aureus 
2021-08-14 | PXD025013 | Pride
Chronic bovine mastitis Surface shaving Biotinylaton Host adaption Staphylococcus aureus Cell surface proteome 
ProteomicsProteomic study of Staphylococcus haemolyticus after the host-microbe co-colonisation
In this study, the adhesive and biofilm forming properties of ten clinical and ten commensal S. haemolyticus isolates were examined using standard adhesion and biofilm assays, in addition we selected one clinical S. haemolyticus isolate for bacterial surface shaving. The surface shaving approach was...
ORGANISM(S): Staphylococcus haemolyticus 
2020-05-26 | PXD014450 | Pride
Tandem mass tag Surface shaving Tmt Staphylococcus haemolyticus Q exactive hf 
ProteomicsSurface proteome of Lactobacillus casei GCRL163 under heat adaptation – extracellular fluid
Cell surface proteins are constantly impacted by environmental stresses. To understand the impact of heat adaptation on the Lactobacillus casei GCRL163, trypsin shaving technique was used to extract the surface proteins of the strain and the protein fraction obtained analysed using gel-free proteomi...
ORGANISM(S): Lactobacillus casei W56 
2022-03-01 | PXD009638 | Pride
Lactobacillus Surface proteins Proteomics Heat adaptation 
UnknownIdentification of surface proteins in a clinical Staphylococcus haemolyticus isolate by bacterial surface shaving.
Not available
S-EPMC7137321 | biostudies-literature
ProteomicsSurface-shaving of Staphylococcus aureus strains using Lipid-based Protein Immobilization (LPI) and quantitative proteomic analysis reveal differences in protein expression levels of the surfaceome
Staphylococcus aureus is a pathogen which can cause a wide range of infections. To find new targets for diagnostics and treatment as well as understanding host-pathogen interactions, many studies have focused on the bacterial surface proteins. In the study presented here, bacterial cell surface-shav...
ORGANISM(S): Staphylococcus aureus 
2024-10-17 | PXD025436 | Pride
Proteomics Relative quantification Mass spectrometry Virulence factors Staphylococcus aureus Surfaceome Tandem mass tags 
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