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ProteomicsDIA-SIFT: A precursor and product ion filter for accurate stable isotope data-independent acquisition proteomics
Human 293T cells grown in SILAC media, mixed at known ratios (1/5, 1/3, 1/2, 1, 2, 3, 5). Data acquired using the UDMSE method on a Synapt G2-S. Accompanies the DIA-SIFT project (github.com/martin-lab/DIA-SIFT).
ORGANISM(S): Homo sapiens (Human) 
2018-07-16 | PXD009949 | Pride
Human Mse 293t Silac Synapt 
ProteomicsPytheas E. coli 16S rRNA sample analysis
Mass spectrometry remains an important method for analysis of modified nucleosides ubiquitously present in cellular RNAs, in particular for ribosomal and transfer RNAs that play crucial roles in mRNA translation and decoding. Furthermore, modifications have effect on the lifetimes of nucleic acids i...
ORGANISM(S): Escherichia coli 
2022-05-04 | PXD030538 | Pride
16s Rna Ribosome Isotope labeling Pytheas 
ProteomicsIdentification of dystrophin Dp71dΔ71 associated proteins in PC12 cells by quantitative proteomics
Dystrophin Dp71 is the main product of the DMD (Duchenne muscular dystrophy) gene in the brain. Dystrophin Dp71 is essential for the development of the nervous system and its alteration is associated with intellectual disability. Different isoforms of Dp71, with different subcellular locations, are ...
ORGANISM(S): Rattus norvegicus (Rat) 
2024-11-01 | PXD021886 | Pride
Quantitative proteomics. Dp71 Protein interaction Dmd 
MetabolomicsTemporal multi-omics dataset of a cucurbit–powdery mildew interaction

This study presents a time-resolved untargeted LC–MS/MS metabolomics dataset of the interaction between melon (Cucumis melo) and the obligate biotrophic fungus Podosphaera xanthii, the causal agent of cucurbit powdery mildew. Mock-treated and inoculated plants were sampled every 12 hours from 12 ...

2026-09-24 | MTBLS15447 | MetaboLights
ProteomicsProteoWizard Signal Processing Evaluation: Waters G2-S QqToF, Human K562
3 replicates collected in profile mode (MS and MS/MS) for evaluation of ProteoWizard signal processing.
ORGANISM(S): K562 Human 
2014-08-24 | MSV000078829 | MassIVE
MetabolomicsMetabolomic Discrimination of Near Isogenic Low and High Phytate Soybean Seeds
Methodologies for untargeted metabolomic profiling using liquid chromatography-mass spectrometry (LC-MS) were developed and applied to lipid-depleted methanolic extracts of soybeans seeds obtained from four near isogenic soybean lines (NILs) that differed in phytate content. The four lines differed ...
2016-02-04 | MTBLS120 | MetaboLights
ProteomicsProteomic characterization of the pellicle of Toxoplasma gondii
Toxoplasma gondii is an obligate intracellular parasite. The ability to invade cells and proliferate successfully is given by the machinery found in the pellicle of the parasite, the pellicle is a complex of three membranes. Despite the importance of the pellicle in the biology of Toxoplasma, its pr...
ORGANISM(S): Toxoplasma gondii 
2021-02-16 | PXD022398 | Pride
Toxoplasma Mass spectrometry Protein quantification Adhesion Srs Pellicle 
ProteomicsS. coelicolor M1146 pCAPbtm1 and pCAPbtm5 Synapt analysis
pCAPbtm1 and pCAPbtm5 expressed in S. coelicolor M1146.
ORGANISM(S): Streptomyces Coelicolor M1146 
2018-04-06 | MSV000082245 | MassIVE
ProteomicsMass spectrometry based quantitative proteome analyses for the import mutants ppi2 and tic56-1 as well as for spectinomycin treated Arabidopsis thalian plants
We acquired quantitative proteomics data from eight week old ppi2 and tic56-1 mutants as well as from wild type treated with 60 µg/ml spectinomycin and related them to their respective wildtype reference. Protein identification and quantification was performed by data-independent MSE acquisition on ...
ORGANISM(S): Arabidopsis thaliana (Mouse-ear cress) 
2016-12-14 | PXD004125 | Pride
Hdmse Tic56-1 Plastid Spectinomycin Plastidic translation Quantitative mass spectrometry Shotgun proteomics Toc-tic-import machinery Hi3 quantification Ppi2 
ProteomicsEvaluation of drift time specific collision energies
Comparison among the following data independent acquisition modes provided on the Waters Synapt G2-S instrument: MSE, MSE with Ion Mobility (HDMSE), and MSE with Ion Mobility and drift time specific collision energies (UDMSE). The following on-column loads and LC gradient lengths have been us...
ORGANISM(S): Homo sapiens (Human) 
2013-12-05 | PXD000303 | Pride
Human Dda Hela Ion mobility Methodology Q-exactive Lc-q-tof-ms 
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