Tian Yuan Y - OmicsDI

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Unknown (1131)
Proteomics (73)
Transcriptomics (8)
Genomics (2)
Metabolomics (2)

Organisms

Homo sapiens (41)
Mycobacterium tuberculosis SP7 (21)
Mycobacterium tuberculosis SP10 (21)
Mycobacterium tuberculosis SP13 (21)
Mycobacterium tuberculosis SP22 (21)
Chlamydomonas reinhardtii (21)
Enterococcus mundtii CRL35 (21)
Oncorhynchus tshawytscha (21)
Pseudomonas canadensis (21)
Pseudomonas aeruginosa PAO1H2O (21)
Human alphaherpesvirus 1 strain 17 (21)
Mycobacterium tuberculosis SP1 (21)
Marchantia polymorpha subsp. ruderalis (21)
Methylocystis sp. (21)
Exiguobacterium sp. SH31 (21)
Palaemonetes sp. common grass shrimp associated circular virus (21)
Amaranthus tricolor (21)
Mus musculus (6)
Severe acute respiratory syndrome coronavirus 2 (2)
Tetrahymena thermophila (1)
Elaphe taeniura (1)
Mizuhopecten yessoensis (1)
Diaphorina citri (1)
Haemaphysalis flava (1)
Capsella rubella (1)
unclassified Chlorella (1)
unclassified Symbiodinium (1)
Danio rerio (1)
Arabidopsis thaliana (1)
Escherichia coli (1)

Repository

iProX (38)
pride (21)
PeptideAtlas (11)
biostudies-arrayexpress (8)
MassIVE (3)
EGA (2)
GNPS (1)
MetaboLights (1)

Tissue

Plasma Non-glyco (11)
Cell culture (8)
Blood plasma (3)
Blood cell (2)
Pancreatic adenocarcinoma cell line (1)
Pancreatic stellate cell (1)
Cervix squamous epithelium (1)
Neoplastic cell (1)
Kidney cell (1)
Malignant cell (1)
Early embryonic cell (1)
Cell suspension culture (1)
Lung (1)
Pancreas (1)
Heart (1)
Epithelial cell (1)
Whole body (1)

Disease

Pancreatic ductal adenocarcinoma (2)
Cervix carcinoma (2)
Lemierre's syndrome (1)
Pancreatic carcinoma (1)
Lung carcinoma (1)
Severe acute respiratory syndrome (1)
COVID-19 (1)
Cardiovascular system disease (1)
Colon cancer (1)

Technology Type

Mass Spectrometry (21)
Shotgun proteomics (10)
Bottom-up proteomics (5)
Data-dependent acquisition (5)
Mass spectrometry (1)
DiaPASEF (1)
Gel-based experiment (1)
Top-down proteomics (1)
Affinity purification coupled with mass spectrometry proteomics (1)
Data-independent acquisition (1)

Instrument Platform

LTQ Orbitrap Velos (13)
Orbitrap Fusion Lumos (2)
Q Exactive (1)
Liquid Chromatography MS - negative - reverse phase (1)
Liquid Chromatography MS - positive - reverse phase (1)

Publication Date

2015 (12)
2021 (10)
2025 (9)
2022 (9)
2019 (4)
2026 (3)
2024 (3)
2014 (2)
2012 (2)
2011 (2)
2020 (2)
2023 (2)
2018 (2)
2010 (1)

UNIPROT ID/AC

Q86YZ3 (11)
P52209 (11)
Q9C075 (11)
Q99456 (11)
Q92764 (11)
Q8N1N4 (11)
Q86Y46 (11)
P48643 (11)
P30613 (11)
O14556 (11)
Q7Z3Z0 (11)
Q7Z3Y8 (11)
Q7Z3Y7 (11)
Q7RTS7 (11)
Q6KB66 (11)
Q14974 (11)
P40227 (11)
P35222 (11)
Q5XKE5 (11)
Q3SY84 (11)
Q15323 (11)
Q14CN4 (11)
Q14532 (11)
Q14525 (11)
Q04695 (11)
Q01546 (11)
P84077 (11)
P62241 (11)
P61204 (11)
P48668 (11)

ENSEMBL ID

ENSG00000170477 (11)
ENSG00000147251 (4)

CHEBI ID

CHEBI:167859 (1)
CHEBI:167856 (1)
CHEBI:167854 (1)
CHEBI:167851 (1)
CHEBI:167848 (1)
CHEBI:167847 (1)
CHEBI:167844 (1)
CHEBI:167843 (1)
CHEBI:167839 (1)
CHEBI:167834 (1)
CHEBI:167831 (1)
CHEBI:167829 (1)
CHEBI:167828 (1)
CHEBI:167813 (1)
CHEBI:167811 (1)
CHEBI:167805 (1)
CHEBI:167801 (1)
CHEBI:167799 (1)
CHEBI:167793 (1)
CHEBI:167791 (1)
CHEBI:167787 (1)
CHEBI:167778 (1)
CHEBI:167776 (1)
CHEBI:167773 (1)
CHEBI:167772 (1)
CHEBI:167769 (1)
CHEBI:167767 (1)
CHEBI:167764 (1)
CHEBI:167759 (1)
CHEBI:167757 (1)

Metabolite Name

3-acetyl-11-keto-beta-boswellic acid (1)
3-methyl-2-oxindole (1)
2-trans-hexadecenoic acid (1)
Rac-glycerol 1-myristate (1)
Methyl 2-hydroxy-4-{3-[(4-oxo-3-phenyl-4h-chromen-7-yl)oxy]propoxy}-3-propylbenzoate (1)
Palmitelaidic acid methyl ester (1)
5-hydroxy-3-(hydroxymethyl)-6-isopropyl-2-oxo-3-cyclohexen-1-yl 3-methylpentanoate (1)
N-[2-(trifluoromethyl)phenyl]pyrrolidine-1-carbothioamide (1)
7-hydroxytestosterone (1)
4-(methylthio) aniline (1)
Methyl 4-(aminocarbonyl)-n-cyanotetrahydropyridine-1(2H)-carbimidothioate (1)
Alpha-pinene-2-oxide (1)
Ethyl 3-[2-(diphenylmethylidene)hydrazino]but-2-enoate (1)
N-[3-(aminosulfonyl)phenyl]-2-phenoxynicotinamide (1)
5-dihydrotestosterone (1)
3-{4-[(4-fluorophenyl)sulfonyl]piperazino}-4H-chromen-4-one (1)
Delta9-THC (1)
3-(benzylamino)-5-(4-chlorophenyl)cyclohex-2-en-1-one (1)
L-aspartic acid beta-benzyl ester (1)
Beta-asarone (1)
11-hydroxy-17-methyltestosterone (1)
6-O-methylscutellarin (1)
DL-metanephrine (1)
4-methoxycinnamaldehyde (1)
6-hydroxycortisol (1)
N1-[2-({[3-chloro-5-(trifluoromethyl)-2-pyridyl]methyl}thio)ethyl]benzamide (1)
Ethyl 3-cyano-6-methyl-2-({2-[(2-thienylcarbonyl)amino]phenyl}thio)isonicotinate (1)
2-(propylthio)nicotinic acid (1)
N'-cyano-N-[2-(trifluoromethyl)phenyl]pyrrolidine-1-carboximidamide (1)
N-oleoyl dopamine (1)

Study type

Transcription profiling by array (5)
RNA-seq of coding RNA (2)
Methylation profiling by array (1)

Release Date

2025 (222)
2023 (169)
2022 (155)
2024 (145)
2021 (103)
2020 (87)
2019 (59)
2018 (35)
2017 (34)
2016 (32)
2026 (30)
2015 (25)
2014 (15)
2013 (8)
2012 (7)
2011 (5)
2010 (3)
2005 (2)
2009 (1)
2008 (1)
2007 (1)

Lab affiliation

Doctor at Tongji Hospital, Huazhong University of Science and Technology, Wuhan, China (1)
Department of Chemistry, Southern University of Science and Technology, Shenzhen, China (1)
hubei academy of agricultural sciences (1)
Department of Pediatrics, the Affiliated Huai’an No.1 People’s Hospital of Nanjing Medical University, Huai’an , China (1)
Vascular Biology, Institute for Stroke and Dementia Research (ISD), LMU Klinikum, Ludwig-Maximilians-University (LMU) Munich, Germany. (1)
Biological mass spectrometry and proteomics group, Department of Chemistry High-resolution mass spectrometry platform, Core research facilities Guangdong provincial key laboratory for cell microenvironment and disease research Southern University of Science and Technology (SUSTech) 403, 1st research building, 1088 Xueyuan Rd., Nanshan, Shenzhen (1)
Jilin Agricultural University-Jilin Province Food Biomanufacturing Technology Innovation Center (1)
Center for Biologics Evaluation and Research Division of Bacterial, Parasitic and Allergenic Products Food and Drug Administration (1)
1 Department of Hepatobiliary & Pancreatic Surgery, Zhongnan Hospital of Wuhan University, Wuhan, 430071, PR China. 2 Clinical Medicine Research Center for Minimally Invasive Procedure of Hepatobiliary & Pancreatic Diseases of Hubei Province, Hubei, PR China. 3 Taikang Center for Life and Medical Sciences of Wuhan University (1)
Lanzhou Veterinary Research Institute, Chinese Academy of Agricultural Science, Xujiaping No.1, Lanzhou, Gansu, 730046 (1)
Lanzhou University, Lanzhou, Gansu Province, China (1)
1 Cancer Institute, Xuzhou Medical University, Xuzhou, Jiangsu, China. 2 Center of Clinical Oncology, The Affiliated Hospital of Xuzhou Medical University, Xuzhou, China. 3 State Key Laboratory Jiangsu Center for the Collaboration and Innovation of Cancer Biotherapy, Cancer Institute, Xuzhou Medical University, Xuzhou, Jiangsu, China. (1)
Department of Physiology and Biophysics University of Mississippi Medical Cente (1)
Department of Physiology and Biophysics University of Mississippi Medical Center (1)
Shenzhen University, China (1)
1Department of Hepatobiliary & Pancreatic Surgery, Zhongnan Hospital of Wuhan University, Wuhan, 430071, PR China. 2Clinical Medicine Research Center for Minimally Invasive Procedure of Hepatobiliary & Pancreatic Diseases of Hubei Province, Hubei, PR China. 3Taikang Center for Life and Medical Sciences of Wuhan University (1)
Department of Computer Science and Engineering, University of North Texas (1)
Beijing Key Laboratory for Prevention and Control of Infectious Diseases in Livestock and Poultry, Institute of Animal Husbandry and Veterinary Medicine, Beijing Academy of Agriculture and Forestry Sciences, Haidian District, Beijing, China. (1)
School of Chemical Science & Engineering, Tongji University, Shanghai 200092, China (1)
HHubei Academy of Agricultural Sciences, Wuhan, China ubei Academy of Agricultural Sciences, Wuhan, China (1)
Tianjin Medical University (1)

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The plasma of the sepsis patient survivors and non-survivors (n=10/group) were analyzed using glycoproteomics approach.

ORGANISM(S): Homo sapiens (Human)

2018-10-19 | PXD001425 | Pride

MMP-9 dependent extracellular protein changes in the left ventriclar infarcts at day 7 post myocardial infarction

Glycopeptides of the LVI tissues of WT and MMP-9 null mice at day-7 post-MI.

ORGANISM(S): Mus musculus (Mouse)

2018-03-06 | PXD001393 | Pride

Mmp-9 Lv Glycopeptides Myocardial infarction

Understanding how H1 modifications influence chromatin accessibility around DSBs, to elucidate the underlying mechanisms.

For H1 PTM identification, HeLa cells were exposed to 10 Gy IR or not and released for 2 min. Histones were extracted and deamidated peptides were identified by mass spectrometry (MS). For CTPS1 phosphorylation sites identification, whole cell lysates were extracted, immunoprecipitated using anti-F...

ORGANISM(S): Homo sapiens (Human)

2025-02-19 | PXD060714 | Pride

Histone Human，hela cell line

Tian-Huang Formula, a Traditional Chinese Medicinal Prescription, Improves Hepatosteatosis and Glucose Intolerance Targeting AKT-SREBP Nexus in Diet-Induced Obese Rats.

Not available

S-EPMC7955866 | biostudies-literature

Evaluation of functional genetic variants at 6q25.1 and risk of breast cancer in a Chinese population.

Not available

S-EPMC4303231 | biostudies-literature

Identification and fungicides sensitivity evaluation of the causal agent of cobweb disease on Lyophyllum decastes in China.

Not available

S-EPMC11127302 | biostudies-literature

High incidence of gallstones after Roux-en-Y reconstruction gastrectomy in gastric cancer: a multicenter, long-term cohort study.

Not available

S-EPMC11020035 | biostudies-literature

The Y chromosome sequence of the channel catfish suggests novel sex determination mechanisms in teleost fish.

Not available

S-EPMC6346536 | biostudies-literature

The role of late reperfusion in ST-segment elevation myocardial infarction: a real-world retrospective cohort study.

Not available

S-EPMC7189551 | biostudies-literature

Multidimensional proteomic landscape of intercellular signaling in pancreatic cancer

We developed a multidimensional proteomic strategy to profile the glycosylated secreted and plasma membrane (S-PM) proteome of 100 human pancreatic tissue samples to an unprecedented depth, define cell-type origins of these S-PM proteins through spatial proteomics, and identify potential paracrine c...

ORGANISM(S): Homo sapiens (Human) Mus musculus (Mouse)

2024-08-19 | PXD048644 | Pride

Human Spatial proteomics Phosphoproteomics Pancreatic cancer Shedding Prm Glycoproteomics Mouse Dda Lc-ms/ms

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1216 Results

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