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ProteomicsProteomic analysis of p62 bodies
Relative abundance of each protein in p62 bodies was calculated based on label-free quantification (LFQ) intensity.
ORGANISM(S): Homo sapiens (Human) 
2026-04-23 | PXD074538 | Pride
Lc-ms/ms Dia Humam Faps 
ProteomicsProteome analysis in hepatocyte-specific Atg7-knockout mice with different p62 mutations
To investigate global proteome changes dependent on KEAP1-p62 binding in vivo, we performed cytoplasmic proteome profiling.
ORGANISM(S): Mus musculus (Mouse) 
2025-04-23 | PXD061879 | Pride
Lc-msms Liver Mice 
ProteomicsPurification of ubiquitylated proteins from HCT116 cells
By hyperosmotic stimuli, a slight increase in the level of ubiquitylated proteins was observed. So we tried to identify the di-Gly peptides.
ORGANISM(S): Homo sapiens (Human) 
2020-02-18 | PXD016369 | Pride
Ubiquitylated proteins Lc-ms/ms 
ProteomicsAbsolute quantification analysis of ubiquitin chains conjugated to GP8 using an in vitro ubiquitination reaction.
To examine whether ARIH1-UBE2L3 is involved in the atypical ubiquitination of Nrf1 by SCFFBS2, we compared the ubiquitin linkage types between three reactions using GP8: E1/UBE2D1/SCFFBS2, the complete reaction including E1/UBE2D1/SCFFBS2/Nedd8 sys/ARIH1/UBE2L3, and the complete reaction in the abse...
ORGANISM(S): Homo sapiens (Human) 
2024-08-06 | PXD053707 | Pride
Nrf1 Ubiquitination Fbs2 
ProteomicsAbsolute quantification analysis of ubiquitin chains attached to Nrf1 purified from NGLY1-KO cells overexpressing Nrf1-FLAG with HA-FBS2.
We examined ubiquitin-linkages on Nrf1 purified from cell lysates of NGLY1-KO cells overexpressing Nrf1-FLAG with HA-FBS2. The ubiquitin linkage types were quantified using the LC-MS/MS-based absolute quantification method, ubiquitin parallel reaction monitoring (Ub-AQUA/PRM).
ORGANISM(S): Homo sapiens (Human) 
2024-08-06 | PXD053753 | Pride
Nrf1 Ubiquitination Fbs2 
ProteomicsPurification of proteasome-interacting proteins for MS analysis.
To proteomic screen for proteasome-interacting proteins
ORGANISM(S): Homo sapiens (Human) 
2026-03-20 | PXD016367 | Pride
X-link Lc-ms/ms 
ProteomicsPhosphoproteome data of WT and ob/ob mice liver during starvation
Ten-week-old male mice (WT and ob/ob) were starved for 0, 2, 4, 6, 8, 12, 16, and 24 hours and liver samples were collected. Total proteins extracted during sample preparation of metabolomic analysis were subjected to the following phosphoproteomic analysis. As described above, 2 mg of protein solut...
ORGANISM(S): Mus Musculus (mouse) 
2025-05-20 | PXD053026 | JPOST Repository
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