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ProteomicsIdentification of RNF111 substrates by integrative ubiquitome and proteome analysis
In the present work, we sought to identify exhaustively the endogenous substrates ubiquitinated and degraded by the E3 ubiquitin ligase RNF111 in presence of TGF-β signaling by performing label free quantitative proteomics after enrichment of ubiquitinated proteins (ubiquitome) in parental U2OS cell...
ORGANISM(S): Homo sapiens (Human) 
2021-11-17 | PXD025890 | Pride
Ubiquitome E3 ubiquitin ligase Tgf-beta Rnf111 
ProteomicsUbiquitome change of Nicotiana benthamiana infected with rice stripe virus
To reveal the global changes of the ubiquitome change due to RSV infection, a label-free quantitation ubiquitomics approach was performed using leaves from RSV-infected and mock-infected N. benthamiana at 10 dpi.
ORGANISM(S): Nicotiana benthamiana 
2023-03-11 | PXD037442 | Pride
Rice stripe virus Nicotiana benthamiana Ubiquitome Lc-ms/ms 
ProteomicsProteome and Ubiquitome Changes during Rose Petal Senescence
Petal senescence involves numerous programmed changes in biological and biochemical processes. Ubiquitination plays a critical role in protein degradation, a hallmark of organ senescence. Therefore, we investigated changes in the proteome and ubiquitome of senescing rose (Rosa hybrida) petals to bet...
ORGANISM(S): Rosa chinensis 
2020-05-27 | PXD016490 | Pride
Rose hybrid  petal senescence  proteome  ubiquitination 
ProteomicsSystematic analysis of the ubiquitome in mouse testis
The ubiquitome was systematically investigated in mouse testis using di-glycine remnant antibodies by LC-MS/MS.
ORGANISM(S): Mus musculus (Mouse) 
2021-06-03 | PXD025866 | Pride
Ubiquitination  testis  mouse 
UnknownProteome and Ubiquitome Changes during Rose Petal Senescence.
Not available
S-EPMC6940906 | biostudies-literature
ProteomicsBuffalo testis ubiquitome LC-MS/MS
Protein ubiquitination, a major and conserved post-translational modification, is known to play a critical regulatory role in many biological processes in eukaryotes. Although several ubiquitinated proteins have been found in buffalo (Bubalus bubalis) testis in our previous studies, large-scale prof...
ORGANISM(S): Bos taurus (Bovine) 
2020-06-05 | PXD012231 | Pride
Adult buffalo Testis Proteome Lysine ubiquitination Lc-ms/ms 
UnknownComprehensive profiling of lysine ubiquitome reveals diverse functions of lysine ubiquitination in common wheat.
Not available
S-EPMC5648756 | biostudies-literature
UnknownComparative Ubiquitome Analysis under Heat Stress Reveals Diverse Functions of Ubiquitination in Saccharina japonica.
Not available
S-EPMC7663155 | biostudies-literature
ProteomicsComprehensive profiling of lysine ubiquitome reveals diverse functions of lysine ubiquitination in common wheat
Protein ubiquitination, which is a major post-translational modifications that occurs in eukaryotic cells, is involved in diverse biological processes. To date, large-scale profiling of the ubiquitome in common wheat has not been reported, despite its status as the major cereal crop in the world. He...
ORGANISM(S): Triticum aestivum (Wheat) 
2017-11-01 | PXD007243 | Pride
Triticum aestivum l.  post-translational modification  lysine ubiquitination  proteomics  mass spectrometry 
ProteomicsUbiquitome analysis of UHRF1 and UHRF2-deficient mESCs
The E3 ligase UHRF1 is an essential epigenetic cofactor for DNMT1 dependent maintenance DNA methylation, which provides a binding platform for DNMT1 by both cooperative binding of histones and hemi-methylated DNA as well as by ubiquitinating histone H3. Here, we conduct a comprehensive screen to ide...
ORGANISM(S): Mus musculus (Mouse) 
2017-10-24 | PXD006593 | Pride
Ubiquitination Paf Mouse embryonic stem cells Uhrf 
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