Ulitsky Igor I - OmicsDI

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Transcriptomics (2)
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Danio rerio (2)
Pseudomonas phage PaMx74 (2)
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Mus musculus (1)

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biostudies-arrayexpress (3)
pride (2)

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Affinity purification coupled with mass spectrometry proteomics (2)
Mass Spectrometry (2)

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2011 (2)
2012 (1)
2025 (1)
2021 (1)

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ChIP-seq (1)
Transcription profiling by array (1)
RNA-seq of coding RNA (1)

Release Date

2011 (2)
2012 (1)

Lab affiliation

Department of Immunology and Regenerative Biology and Department of Molecular Neuroscience, Weizmann Institute of Science, Rehovot 76100, Israel (1)
Department of Biological Regulation, Weizmann Institute of Science, Rehovot 76100, Israel (1)

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Transcriptome of early postnatal brain development of eIF2B-R132H/R132H mutant mice relative to wild-types.

Genome-wide mRNA expression in brains of wild-type and eIF2B-R132H/R132H mutant mice (Geva et al., BRAIN 133 (8), 2010) profiled at postnatal (P) days 1, 18 and 21 to reflect the early proliferative stage prior to white matter establishment (P1) and the peak of oligodendrocye differentiation and mye...

ORGANISM(S): Mus musculus

2011-11-14 | E-GEOD-32201 | biostudies-arrayexpress

BAHCC1 promotes gene expression in neuronal cells by antagonizing SIN3A-HDAC1

Chromatin modifications play a key role in regulating gene expression during development and adult physiology. Histone acetylation, particularly H3K27ac, is associated with increased activity of gene regulatory elements such as enhancers and promoters. However, the regulation of the machinery that w...

ORGANISM(S): Homo sapiens (Human)

2025-06-12 | PXD058811 | Pride

Uncovering deeply conserved motif combinations in rapidly evolving noncoding sequences

Here we focus on identifying conserved elements that are required for Chaserr function, a lncRNA that we recently characterized as being essential for mouse viability (https://doi.org/10.1038/s41467-019-13075-8). Chaserr is highly conserved in different species, and is located in close proximity (<2...

ORGANISM(S): Mus musculus (Mouse)

2021-01-18 | PXD023093 | Pride

Conserved elements Chaserr Lncloom Lncrnas Dhx36

Conserved Function of lincRNAs in Vertebrate Embryonic Development Despite Rapid Sequence Evolution

Thousands of large intervening non-coding RNAs (lincRNAs) have been identified in mammals. To better understand the evolution and functions of these enigmatic RNAs, we used chromatin marks, poly(A)-site mapping and RNA-Seq data, to identify more than 550 distinct lincRNAs in zebrafish. Although thes...

ORGANISM(S): Danio rerio

2011-12-22 | E-GEOD-32880 | biostudies-arrayexpress

Extensive alternative polyadenylation during zebrafish development

The post-transcriptional fate of messenger RNAs (mRNAs) is largely dictated by their 3' untranslated regions (3'UTRs), which are defined by cleavage and polyadenylation (CPA) of pre-mRNAs. We used poly(A)-position profiling by sequencing (3P-Seq) to map poly(A) sites at eight developmental stages an...