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ProteomicsMass spectrometry of circulating antigens products isolated from sera of mice infected with Toxoplasma gondii tachyzoites
Toxoplasma gondii is a ubiquitous apicomplexan protozoan parasite that can infect all warm-blooded animals and lead to toxoplasmosis. Discovering efficient methods for diagnosing T. gondii infection and developing vaccine candidates are essential for controlling this disease. Circulating antigens (C...
ORGANISM(S): Toxoplasma gondii RH 
2021-01-04 | PXD021938 | Pride
Proteomics Toxoplasma gondii Circulating antigens Diagnostic candidates Acute infection Vaccine 
UnknownGenomic and metabolomic insights into the antimicrobial compounds and plant growth-promoting potential of Bacillus velezensis Q-426.
Not available
S-EPMC10548584 | biostudies-literature
MetabolomicsEnterobacter ludwigii protects DSS-induced colitis through choline-mediated immune tolerance
Commensal intestinal bacteria play key roles in regulating cells mediating immune tolerance; however, bacterial strains and related metabolites directly involved in this regulation are largely unknown. Here, using a mouse model of dextran sulfate sodium (DSS)-induced colitis combined with different ...
2024-08-05 | MTBLS5585 | MetaboLights
ProteomicsA WYL transcription factor regulates Lactiplantibacillus plantarum intestinal colonization via perceiving c-di-GMP
The WYL transcription factor (LP_RS00300) is a c-di-GMP effector in L. plantarum WCFS1. LP_RS00300 binds to a special motif within the coding sequence, impeding the transcriptional elongation of LP_RS05345 and LP_RS05225, which encode mucus binding proteins (MucBPs). The perception of c-di-GMP by th...
ORGANISM(S): Lactobacillus plantarum WCFS1 Bacteria 
2025-02-14 | PXD053948 | Pride
C-di-gmp receptor Wyl transcription factor Lactiplantibacillus plantarum 
ProteomicsA c-di-AMP receptor mediates epithelial adhesion of Lactiplantibacillus plantarum
Cyclic di-adenosine monophosphate (c-di-AMP) is a crucial second messenger used by bacteria to mediate bacterial-host interactions. However, its roles in Lactiplantibacillus plantarum remain poorly understood. Here, we identify RwpL, which consists solely of an HTH domain, as a c-di-AMP receptor in ...
ORGANISM(S): Lactobacillus plantarum WCFS1 
2026-05-25 | PXD078286 | Pride
Colonization C-di-amp Lactiplantibacillus plantarum 
TranscriptomicsEvaluation of gene expression data generated from expired Affymetrix GeneChip® microarrays using MAQC reference RNA samples
The Affymetrix GeneChip® system is a commonly used platform for microarray analysis but the technology is inherently expensive. Unfortunately, changes in experimental planning and execution, such as the unavailability of previously anticipated samples or a shift in research focus, may render signifi...
ORGANISM(S): Homo sapiens 
2010-09-02 | E-GEOD-23906 | biostudies-arrayexpress
ProteomicsProteomic analysis of cell cycle arrest and differentiation induction caused by ATPR, a derivative of all-trans retinoic acid, in human gastric cancer SGC-7901 cells
Experimental design: Peptides digested from the total cellular proteins were analyzed by reverse phase LC–MS/MS followed by a label-free quantification analysis. The SEQUEST search engine was used to identify proteins and bioinformatics resources were used to investigate the involved pathways for th...
ORGANISM(S): Homo sapiens (Human) 
2017-02-13 | PXD005605 | Pride
Atpr，cell cycle arrest and differentiation，proteomics analysis，pi3k-akt-foxo-p27kip1 pathway，sgc-7901 cells 
UnknownUpregulated NLGN1 predicts poor survival in colorectal cancer.
Not available
S-EPMC8327451 | biostudies-literature
ProteomicsProteome of lysate granules using G3BP and ASPL, and changes in the G3BP interactome caused by ASPL depletion
Proteome of lysate granules using G3BP and ASPL, and changes in the G3BP interactome caused by ASPL depletion
ORGANISM(S): Homo sapiens (Human) 
2025-08-16 | PXD059889 | Pride
Ribonucleoprotein granule Aspscr1 Ubxd9 Tug Protein homeostasis Viscoelasticity Aspl Stress granule Rheology Vcp/p97 G3bp Ulk Multisystem proteinopathy 
ProteomicsProteomic analysis of SPSB1 interactome
Flag-tagged SPSB1 was overexpressed in human 293FT cells followed by immunoprecipitation using ANTI-FLAG M2-Agarose Affinity Gel. The enriched SPSB1-interacting proteins on affinity gel were subject to quantitative proteomics analysis.
ORGANISM(S): Homo sapiens (Human) 
2026-06-29 | PXD057059 | Pride
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