tyrosine-modified proteins.

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Transcriptomics (1544)
Genomics (315)
Proteomics (302)
Unknown (185)
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Organisms

Homo sapiens (1234)
Mus musculus (691)
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synthetic construct (2)
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gamma proteobacterium HTCC2207 (1)
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Amycolatopsis mediterranei S699 (1)
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Nostoc punctiforme PCC 73102 (1)
Mus musculus domesticus x M. m. molossinus (1)
Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819 (1)

Organisms

Homo sapiens (3)

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biostudies-arrayexpress (1861)
pride (287)
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Tissue

Cell culture (67)
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Disease

Colon cancer (11)
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Short stature-onychodysplasia-facial dysmorphism-hypotrichosis syndrome (1)
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Carcinoma (1)

Technology Type

Mass Spectrometry (287)
Shotgun proteomics (189)
Affinity purification coupled with mass spectrometry proteomics (43)
Bottom-up proteomics (40)
Data-dependent acquisition (27)
Gel-based experiment (17)
Chemical cross-linking coupled with mass spectrometry proteomics (10)
Data-independent acquisition (10)
SRM/MRM (8)
Mass spectrometry (4)
SWATH MS (4)
All-ion fragmentation (3)
Mass spectrometry assay (2)
Top-down proteomics (2)
NMR spectroscopy (1)
Affinity proteomics (1)
DiaPASEF (1)

Instrument Platform

Illumina NovaSeq 6000 (43)
NextSeq 500 (40)
Illumina HiSeq 4000 (29)
Illumina HiSeq 2500 (25)
Illumina HiSeq 2000 (22)
NextSeq 2000 (15)
NextSeq 550 (10)
Element AVITI (7)
Illumina NovaSeq X (7)
Illumina MiSeq (6)
Illumina HiSeq 1500 (6)
Maxwell RSC Instrument (4)
418 [Affymetrix] (4)
DNBSEQ-G400 (4)
ScanArray Express HT [PerkinElmer] (3)
Illumina Genome Analyzer II (3)
N/A (3)
Illumina HiSeq 1000 (3)
Microcentrifuge (2)
10X Genomics Chromium (2)
BAS-1800 [FUJIFILM] (2)
Illumina Genome Analyzer IIx (2)
Axon- GenePix4000B (2)
GenePix 4000B [Axon Instruments] (2)
Illumina HiSeq 3000 (2)
Chromium Controller, 10x Genomics and Chromium X, 10x Genomics (1)
Chromium Controller, 10x Genomics and Chromium X, 10x Genomics (1)
Cell culture (1)
Macbook Pro 2018 (1)
BRB-seq tool and pipeline (1)

Publication Date

2015 (275)
2013 (269)
2014 (241)
2012 (209)
2016 (179)
2010 (160)
2011 (142)
2022 (67)
2009 (64)
2026 (63)
2008 (63)
2023 (61)
2021 (57)
2020 (49)
2025 (47)
2024 (47)
2019 (42)
2018 (40)
2017 (36)
2007 (23)
2006 (15)
2005 (15)
2004 (5)

CHEBI ID

CHEBI:25017 (3)
CHEBI:26271 (3)
CHEBI:27266 (3)
CHEBI:28300 (3)
CHEBI:15354 (2)
CHEBI:15428 (2)
CHEBI:16235 (2)
CHEBI:16449 (2)
CHEBI:16610 (2)
CHEBI:16708 (2)
CHEBI:16811 (2)
CHEBI:16828 (2)
CHEBI:16870 (2)
CHEBI:16919 (2)
CHEBI:17148 (2)
CHEBI:17203 (2)
CHEBI:17368 (2)
CHEBI:17568 (2)
CHEBI:17822 (2)
CHEBI:17895 (2)
CHEBI:18186 (2)
CHEBI:18257 (2)
CHEBI:24898 (2)
CHEBI:25094 (2)
CHEBI:26986 (2)
CHEBI:27897 (2)
CHEBI:29016 (2)
CHEBI:37024 (2)
CHEBI:6650 (2)
CHEBI:10055 (1)

Metabolite Name

Aminoadipic acid (2)
Choline (2)
Creatine (2)
Glutamine (2)
Isoleucine (2)
Methionine (2)
NADH (2)
Proline (2)
Putrescine (2)
Pyruvate (2)
Spermidine (2)
Taurine (2)
Valine (2)
(+)-8'-hydroxyabscisic acid (1)
(-)-11-hydroxy-9,10-dihydrojasmonic acid 11-beta-d-glucoside (1)
(-)-lupinine (1)
(11z,14z)-eicosadienoylcarnitine (1)
(1s,2r)-1,2-dihydrodibenzo[b,d]thiophene-1,2-diol (1)
(1s,2r,3s,5s,6s,16e,18e,20r,21s)-11-chloro-21-hydroxy-12,20-dimethoxy-2,5,16-trimethyl-8,23-dioxo-4,24-dioxa-9,22-diazatetracyclo[19.3.1.1~10,14~.0~3,5~]hexacosa-10(26),11,13,16,18-pentaen-6-yl 2-methylpropanoate (1)
(2,7-dimethyloctahydro-1h-cyclopenta[c]pyridin-4-yl)methanol (1)
(2e)-2-[(4z)-5-(methylsulfanyl)-4-penten-2-yn-1-ylidene]-1,6-dioxaspiro[4.4]non-3-ene (1)
(2r,3s)-2-methylcitric acid (1)
(2s,3r,4e,8e)-3-hydroxy-2-[methyl(stearoyl)amino]-4,8-octadecadien-1-yl hydrogen sulfate (1)
(2s,3s,4s,5r,6s)-6-(hydroxymethyl)-5-{[(2r,3s,4s,5r,6s)-3,4,5-trihydroxy-6-(hydroxymethyl)-5-{[(2r,3s,4r,5r,6s)-3,4,5-trihydroxy-6-(hydroxymethyl)tetrahydro-2h-pyran-2-yl]oxy}tetrahydro-2h-pyran-2-yl]oxy}tetrahydro-2h-pyran-2,3,4,5-tetrol (1)
(2s,4ar,4br,6as,12bs,12cs,14as)-2-(2-hydroxy-2-propanyl)-12b,12c-dimethyl-3,4,5,6,6a,7,12,12b,12c,13,14,14a-dodecahydro-2h-chromeno[5',6':6,7]indeno[1,2-b]indole-4a(4bh)-carbaldehyde (1)
(2s,4s)-4-amino-2-hydroxy-2-methylpentanedioic acid (1)
(2s,4s)-pinnatanine (1)
(2z)-3-{5-[(4z)-5-(methylsulfanyl)-4-penten-2-yn-1-yl]-2-furyl}acrylaldehyde (1)
(2z,4z)-2-hydroxyhexa-2,4-dienoic acid (1)
(3-methyl-2-butenyl)-benzene (1)

First Public Date

2022 (2)
2014 (2)

Modification

4x(2)H labeled dimethylated L-lysine (2)
4'-dihydroxyphenylalanine (1)
4-tetrahydrothiazine-3-carboxylic acid (1)
N6 (1)

Study type

Transcription profiling by array (970)
RNA-seq of coding RNA (301)
ChIP-seq (277)
Other (45)
ChIP-chip by tiling array (28)
Methylation profiling by array (24)
Methylation profiling by high throughput sequencing (24)
ChIP-chip by array (22)
RNA-seq of non coding RNA (22)
RNA-seq of coding RNA from single cells (20)
RNA-seq of total RNA (18)
Comparative genomic hybridization by array (12)
Unknown experiment type (10)
RNAi profiling by array (10)
DNA-seq (10)
Animal - High-throughput sequencing (8)
Transcription profiling by SAGE (6)
Cell line - High-throughput sequencing (6)
Transcription profiling by tiling array (6)
ATAC-seq (4)
RIP-seq (4)
Human - High-throughput sequencing (3)
MNase-seq (2)
Cell line - One-color microarray (2)
Genotyping by array (2)
CLIP-seq (2)
Transcription profiling by RT-PCR (2)
MicroRNA profiling by high throughput sequencing (2)
Bisulfite-seq (2)
Hi-C (2)

Release Date

2013 (274)
2015 (263)
2014 (248)
2012 (214)
2016 (176)
2010 (164)
2011 (148)
2009 (73)
2008 (68)
2021 (47)
2022 (40)
2026 (38)
2023 (38)
2025 (35)
2017 (35)
2024 (33)
2020 (32)
2018 (30)
2019 (25)
2007 (25)
2005 (17)
2006 (15)
2004 (5)
2003 (1)
2001 (1)
2000 (1)

Lab affiliation

Division of Cell Matrix Biology & Regenerative Medicine (L5) / Division of Cell Matrix Biology & Regenerative Medicine, University of Manchester (11)
Amsterdam UMC, Vrije Universiteit Amsterdam, Medical Oncology, Cancer Center Amsterdam, OncoProteomics Laboratory, Amsterdam, Netherlands (9)
OncoProteomics Laboratory, Dept of Medical Oncology, VU University Medical Center, Amsterdam, The Netherlands (9)
University of Washington (9)
Basic Immune System of Plants / Protein Mass Spectrometry Max Planck Institute for Plant Breeding Research Carl-von-Linne-Weg 10, 50829 Cologne, Germany (6)
Distinguished Professor Associate Chair for Undergraduate Affairs (4)
Department of Biology, University of Fribourg Chemin du Musée 10, 1700 Fribourg, Switzerland T +41 26 300 8631 (3)
Department of Pediatrics, University of Groningen, University Medical Center Groningen (UMCG), 9713 AV Groningen, The Netherlands (3)
Lineberger Comprehensive Cancer Center at UNC Chapel Hill (3)
The University of Manchester (3)
Chair of Proteomics and Bioanalytics, Technical University of Munich, Freising, Germany (2)
College of Agriculture, Nanjing Agricultural University, Nanjing, China (2)
Department of Proteomics, Novo Nordisk Foundation Center for Protein Research, Faculty of Health and Medical Sciences, University of Copenhagen, Blegdamsvej 3B, 2200 Copenhagen, Denmark (2)
Division of Life Science, The Hong Kong University of Science and Technology, Hong Kong SAR, China (2)
Institute of Pharmacology and Structural Biology, CNRS, Toulouse (2)
Lanzhou Veterinary Research Institute (2)
Novo Nordisk Foundation Center for Protein Research, Faculty of Health and Medical Sciences, University of Copenhagen, Blegdamsvej 3B, 2200 Copenhagen, Denmark (2)
Proteomics Core Facility and Research Group Proteomics, CEITEC-MU, Masaryk University, Brno, Czech Republic (2)
Tufts University (2)
University of Vienna, Faculty of Chemistry, Department of Analytical Chemistry (2)
Washington University in St. Louis School of Medicine (2)
1 Bioanalytics, Institute of Biotechnology, Technische Universität Berlin, 13355 Berlin, Germany 2 Wellcome Centre for Cell Biology, School of Biologic Sciences, University of Edinburgh, Edinburgh (1)
1 Bioanalytics, Institute of Biotechnology, Technische Universität Berlin, 13355 Berlin, Germany 2 Wellcome Centre for Cell Biology, School of Biologic Sciences, University of Edinburgh, Edinburgh EH9 3BF, Scotland, United Kingdom (1)
1. University of Edinburgh, Wellcome Trust Centre for Cell Biology, Edinburgh, United Kingdom. 2. Technische Universität Berlin, Institute of Biotechnology, Department of Bioanalytics, Berlin, Germany. (1)
1. Wellcome Trust Centre for Cell Biology, University of Edinburgh, Edinburgh EH9 3BF, United Kingdom. 2. Chair of Bioanalytics, Institute of Biotechnology, Technische Universität Berlin, 13355 Berlin, Germany. (1)
1Department of Microbiology, Immunology and Molecular Genetics, University of California, Los Angeles, Los Angeles, CA, USA 2Institute for Quantitative and Computational Biosciences, University of California, Los Angeles, Los Angeles, CA, USA 3Molecular Biology Institute, University of California, Los Angeles, Los Angeles, CA, USA (1)
1Infection and Immunity Program and Department of Biochemistry and Molecular Biology, Biomedicine Discovery Institute, Monash University, Clayton 3800, Victoria, Australia (1)
ARUK Senior Research Fellow & Departmental Research Lecturer Department of Physiology, Anatomy and Genetics, Kavli Institute for Nanoscience Discovery, University of Oxford, UK (1)
ASTRE, Univ Montpellier, CIRAD, INRA, Montpellier, France & CIRAD, UMR ASTRE, F-34398, Montpellier, France (1)
Albert Einstein College of Medicine (1)

Tags

xref:PubMed:35674491 (2)
xref:PubMed:21153051 (1)

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expression in Total and Tyrosine-Modified Proteins upon AXl Inhibitor Treatment

When cell confluency reached ~70%, R428 was added and incubated for 24 h; control cells received an eauiyaent yolume of vehicle (Mso), Both aroups were then exposed to arsenite for 2h, after which cells were harvested for mass-spectrometric analysis.

ORGANISM(S): Homo sapiens (Human)

2026-08-31 | PXD068889 | Pride

Ms human tyrosine-modified proteins.

Integrative genome-wide analysis reveals cooperative regulation of alternative splicing by hnRNP proteins

This SuperSeries is composed of the following subset Series: GSE34992: Integrative genome-wide analysis reveals cooperative regulation of alternative splicing by hnRNP proteins (splice array) GSE34993: Integrative genome-wide analysis reveals cooperative regulation of alternative splicing by hnRNP p...

ORGANISM(S): Homo sapiens

2012-02-20 | E-GEOD-34996 | biostudies-arrayexpress

Glioblastoma microvesicles transport RNA and proteins

Glioblastoma tumour cells release microvesicles (exosomes) containing mRNA, miRNA and angiogenic proteins. These microvesicles are taken up by normal host cells, such as brain microvascular endothelial cells. By incorporating an mRNA for a reporter protein into these microvesicles, we demonstrate th...

ORGANISM(S): Homo sapiens

2008-11-15 | E-GEOD-13470 | biostudies-arrayexpress

Evaluation of mass spectrometry MS/MS spectra for the presence of isopeptide crosslinked peptides

Chronic low dose exposure to organophosphorus pesticides is associated with risk of neurodegenerative disease. The mechanism of neurotoxicity is unknown, though it is independent of acetylcholinesterase inhibition. Adducts on tyrosine, lysine, threonine, and serine can occur after exposure to organo...

ORGANISM(S): Homo sapiens (Human) Mus musculus (Mouse)

2022-02-17 | PXD027203 | Pride

Transglutaminase Dansyl cadaverine Isopeptide Dansyl-aminohexyl qqiv Protein prospector Map-rich tubulin Neurodegenerative disease Crosslinks

Expression of G protein-coupled receptors and related proteins in HEK293, AtT20, BV2, and N18 cell lines as revealed by microarray analysis

This SuperSeries is composed of the following subset Series: GSE25886: Analysis of mRNA levels of GPCR and GPCR-related signaling proteins in 3 mouse cell lines: AtT20, BV2 and N18 GSE25894: Analysis of mRNA levels of GPCR and GPCR-related signaling proteins in the HEK293 cell line Refer to individu...

ORGANISM(S): Homo sapiens

2011-02-01 | E-GEOD-25901 | biostudies-arrayexpress

RNA-Seq of 293T cells depleted of U2AF-related proteins

Characterization of RNA processing events dependent on U2AF-related proteins PUF60 and RBM39. PUF60 (poly-U-binding factor 60 kDa, also known as FIR, Hfp or Ro-bp1) is a splicing factor homologous to the 65 kD subunit of the auxiliary factor of U2 small nuclear ribonucleoprotein (U2AF65). PUF60 has...

ORGANISM(S): Homo sapiens

2018-05-25 | E-MTAB-6010 | biostudies-arrayexpress

Argonaute proteins couple chromatin silencing to alternative splicing

This SuperSeries is composed of the following subset Series: GSE39746: Argonaute proteins couple chromatin silencing to alternative splicing (exon array) GSE39748: Argonaute proteins couple chromatin silencing to alternative splicing (RNA IP-Seq) Refer to individual Series

ORGANISM(S): Mus musculus

2012-08-22 | E-GEOD-39749 | biostudies-arrayexpress

Systematic analysis of the in situ crosstalk of tyrosine modifications reveals no additional natural selection on multiply modified residues.

Not available

S-EPMC4256647 | biostudies-literature

Role of Polycomb group proteins in the DNA damage response – a reassessment

We have investigated whether components of Polycomb repressive complex 1 (PRC1) are recruited to double-strand breaks (DSBs) generated by inducible expression of the AsiSI restriction enzyme in normal human fibroblasts. Using chromatin immunoprecipitation and deep sequencing (ChIP-seq), which detec...

ORGANISM(S): Homo sapiens

2014-07-06 | E-GEOD-55605 | biostudies-arrayexpress

Tet proteins in DNA demethylation and cell fate restriction

DNA methylation at 5-position of cytosine (5mC) is one of the best studied epigenetic modifications that plays important roles in diverse biological processes. Iterative oxidation of 5mC by the Ten-eleven translocation (Tet) family of proteins generates 5-hydroxymethylcytosine (5hmC), 5-formylcytosi...

ORGANISM(S): Mus musculus

2014-09-22 | E-GEOD-56986 | biostudies-arrayexpress

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