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UnknownA Matter of Time: Faster Percolator Analysis via Efficient SVM Learning for Large-Scale Proteomics.
Not available
S-EPMC6420878 | biostudies-literature
UnknownImprovements to the percolator algorithm for Peptide identification from shotgun proteomics data sets.
Not available
S-EPMC2710313 | biostudies-literature
UnknownAerogel-based Leidenfrost vapor percolator for ultra-fast thermal cooling.
Not available
S-EPMC12748645 | biostudies-literature
ProteomicsEnhanced Peptide Identification by Electron Transfer Dissociation Using an Improved Mascot Percolator Algorithm
E.Coli Full Tryptic Digest CID Triplicate Analysis
ORGANISM(S): Homo sapiens (Human) Escherichia coli Escherichia coli (strain K12) 
2013-06-27 | PRD000544 | Pride
ProteomicsDatabase search engines and target database features impinge upon the identification of post-translationally cis-spliced peptides in HLA class I immunopeptidomes
Unconventional epitopes presented by HLA class I complexes are emerging targets for T cell targeted immunotherapies. Their identification by mass spectrometry required development of novel methods to cope with the large number of theoretical candidates. Methods to identify post-translationally splic...
ORGANISM(S): Homo sapiens (Human) 
2022-04-06 | PXD031709 | Pride
K562 cell line Mass spectrometry Peptide splicing Immunopeptidome Hla-i Cis-spliced peptides 
UnknownOptimization of Search Engines and Postprocessing Approaches to Maximize Peptide and Protein Identification for High-Resolution Mass Data.
Not available
S-EPMC4859434 | biostudies-literature
UnknownMachine Learning Strategy That Leverages Large Data sets to Boost Statistical Power in Small-Scale Experiments.
Not available
S-EPMC8455073 | biostudies-literature
ProteomicsHuman Yeast Dilution TMT labelled Rescored with Prosit.
We Have a human yeast dilution dataset in this project. We predict all spectra in the datasets via Prosit then rescore. We have 100% FDR max quant search results using percolator. In addition, we get 1%FDR filtered results with andromeda Scores and another with features extracted from Prosit predict...
ORGANISM(S): Homo sapiens (Human) Saccharomyces cerevisiae (Baker's yeast) 
2022-06-09 | PXD030340 | Pride
Human Cid Ot Yeast Hcd Tmt11plex It Orbitrap Iontrap 
ProteomicstimsTOF Pro datasets for CCS prediction with Mascot-Percolator.
Tryptic digested E. coli dataset fractionated by SCX stagetip and applied to test the CCS prediction model. The Peaklist from the MS/MS spectra as mascot generic format (MGF) was created by compass DataAnalysis 5.2.216.271.5315. Protein and peptides were identified by by Mascot-Percolator.
ORGANISM(S): Escherichia Coli 
2021-09-06 | PXD026087 | JPOST Repository
UnknownSipros Ensemble improves database searching and filtering for complex metaproteomics.
Not available
S-EPMC6192206 | biostudies-literature
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