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TranscriptomicsEpithelium-only cultured stem cells isolated from human pluripotent stem cell derived intestinal organoids grown in matrigel and alginate
Human intestinal organoids were grown in a typical 3D matrigel culture environment, or in an alginate gel, then a subset from each condition were xenotransplanted to vascularized and mature in vivo. Epithelium was isolated and epithelial only organoids (enteroids) were then grown from each condition...
ORGANISM(S): Homo sapiens 
2019-06-27 | E-MTAB-7000 | biostudies-arrayexpress
ProteomicsAlginate metabolic pathways of the strain C42 associated with Sargassum
Based on the genome sequencing and gene annotation, we analyzed the alginate lyases and other genes related to alginate metabolism of strain Vibrio sp. C42, with the highest alginate-degrading activity. Combined with proteome measurement, we proposed its alginate metabolic pathways.
ORGANISM(S): Vibrio atlanticus 
2026-06-04 | PXD037554 | Pride
Alginate Sargassum Alginate lyase Alginate metabolic pathway Vibrio 
ProteomicsCultivable Alginate Lyase-Excreting Bacteria Associated with Sargassum and their alginate metabolic pathways
Based on the genome sequencing and gene annotation, we analyzed the alginate lyases and other genes related to alginate metabolism of strain Vibrio sp. C42, with the highest alginate-degrading activity. Combined with secretome measurement, we proposed its alginate metabolic pathways.
ORGANISM(S): Vibrio atlanticus 
2026-06-04 | PXD029037 | Pride
Alginolytic bacteria Epiphyte Metabolic pathway Sargassum Alginate 
ProteomicsIdentification of adsorbing human plasma proteins on alginate gel beads
The biocompatibility of immunoisolation devices is a major challenge for their use in cellular therapies. Utilisation of alginate for the encapsulation of pancreatic islets as a potential cellular therapy for type 1 diabetes has shown to be limited in terms of long-term graft survival, due to perica...
ORGANISM(S): Homo sapiens (Human) 
2023-03-10 | PXD009135 | Pride
Alginate gel beads Biocompatibility Protein adsorption Proteomics 
TranscriptomicsGene expression in cells encapsulated within different types of alginate microcapsules
D1 multipotent mesenchymal stromal cells (D1‐MSCs,ATCC® CRL 12424TM) and genetically modified with the lentiviral vector pSIN‐EF2‐Epo‐Pur to express erythropoietin (EPO). D1‐MSCs genetically modified to release EPO were immobilized into 3D alginatepoly‐ L‐lysine‐alginate (APA) microcapsules. Since d...
ORGANISM(S): Mus musculus 
2017-10-30 | E-MTAB-5786 | biostudies-arrayexpress
TranscriptomicsTranscription profiling of human mesenchymal stem cells from adipose tissue grown in normal media in monolayer or with LVG or RGD alignate
Experiment to see the effect of regular and RGD alginate on MSC derived from bone marrow and adipose tissue
ORGANISM(S): Homo sapiens 
2008-04-01 | E-MEXP-1273 | biostudies-arrayexpress
Genomicsalginate converting by MCF
alginate converting by MCF Metagenome
PRJNA509496 | ENA
TranscriptomicsDynamic study of In vitro murine follicle maturation in 3% alginate gels
Multilayer murine follicles were grown in 3% alginate and follicles were isolated for transcriptomics analysis at day 0, 2, 4,5,6,and 8 after encapsulation. This data complements to the GSE42795, where follicles were grown in vitro in 0.5% alginate gels A total of 8 samples were analyzed, each of th...
ORGANISM(S): Mus musculus 
2014-06-01 | E-GEOD-55969 | biostudies-arrayexpress
GenomicsRuminal degradation of alginate
Ruminal degradation of alginate from brown seaweed (Saccharina latissima) through 'alginate utilization loci' in Prevotella sp.
PRJEB83690 | ENA
ProteomicsTowards optimized tissue regeneration: A new 3D printable bioink of alginate/cellulose hydrogel loaded with thrombocyte concentrate
Introduction: Autologous platelet concentrates (APC) are pro-angiogenic and can promote wound healing and tissue repair, also in combination with other biomaterials. However, challenging defect situations remain demanding. 3D bioprinting of an APC based bioink encapsulated in a hydrogel could overco...
ORGANISM(S): Homo sapiens (Human) 
2024-06-23 | PXD050629 | Pride
Platelet rich fibrin Additive manufacturing Bioprinting Hydrogel Reconstruction 
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