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ProteomicsProteome analysis of the M. tuberculosis Beijing B0/W148 cluster
The main project purpose is to investigate the fundamental physiological state of M. tuberculosis (MTB) during the infection and the mycobacterial response within the infected host tissue, human lung. High-throughput proteomic analysis of MTB cells will be involved to solve this problem. The descrip...
ORGANISM(S): Mycobacterium tuberculosis Mycobacterium tuberculosis H37Rv Mycobacterium tuberculosis SP1 Mycobacterium tuberculosis SP22 Mycobacterium tuberculosis SP10 Mycobacterium tuberculosis SP13 Mycobacterium tuberculosis SP7 
2016-07-06 | PXD002542 | Pride
Tuberculosis Mtb Beijing Lc-ms/ms 
ProteomicsMultiple pathways for aerobic and arsenate respiration of Melioribacter roseus, a metabolically versatile bacterium representing of Ignavibacteriae phylum
Melioribacter roseus is one of two cultured representatives of the phylum Ignavibacteriae. It could grow by fermentation of sugars and peptides, by aerobic respiration or by dissimilatory reduction of arsenate, nitrite or Fe(III) on fermentable and non-fermentable substrates, what allows this bacter...
ORGANISM(S): Melioribacter roseus (strain JCM 17771 / P3M-2) 
2017-07-19 | PXD003662 | Pride
Melioribacter roseus Lc-ms/ms 
ProteomicsH.pylori, N.gonorrhoeae, E.coli LC-MS/MS
We have developed approach and algorithm to annotated mass-spectra database creation and further spectral based amino acid substitution search. Algorithm is based on a robust procedure of spectral angle comparison. We have shown applicability of the algorithm to large scale datasets of Helicobacter ...
ORGANISM(S): Helicobacter pylori A45 Helicobacter pylori J99 (Campylobacter pylori J99) Neisseria gonorrhoeae (strain ATCC 700825 / FA 1090) Escherichia coli str. K-12 substr. MG1655 Neisseria gonorrhoeae Helicobacter pylori H13-1 Escherichia coli Helicobacter pylori 26695-1 Helicobacter pylori E48 
2016-12-23 | PXD001481 | Pride
H.pylori N.gonorrhoeae E.coli lc-ms/ms 
ProteomicsHT-29 treated with mature fragilysin LC-MSMS
Fragilysin is a protein secreted by toxigenic Bacteroides fragilis strains. Fragilysin has a motive HEXXHXXGXXH, which is a zinc-binding motif found in metalloproteinases clan termed metzincins. In this study we obtained all three known recombinant fragilysin isoforms in Escherichia coli and te...
ORGANISM(S): Homo sapiens (Human) 
2015-05-26 | PXD001271 | Pride
Ht-29 Fragilysin Bft 
ProteomicsDissection of affinity captured LINE-1 macromolecular complexes
Long Interspersed Nuclear Element-1 (LINE-1, L1) is a mobile genetic element active in human genomes. L1-encoded ORF1 and ORF2 proteins bind L1 RNAs, forming ribonucleoproteins (RNPs). These RNPs interact with diverse host proteins, some repressive and others required for the L1 lifecycle. Using dif...
ORGANISM(S): Homo sapiens (Human) 
2018-01-17 | PXD008542 | Pride
Line-1 Protein interactions Affinity proteomics L1 Mass spectrometry Biochemistry Retrotransposon Ribonucleoprotein Rnp Interactome 
OtherProteome-metabolome profiling of ovarian cancer ascites reveals novel components involved in intercellular communication.
Data from ProteomeXchange, PXD ID: PXD001403. File: V022-V023+V053_line8_MGFPeaklist.mgf. Published as part of Mol Cell Proteomics. 2014 Sep 30 . From the Abstract: {{i}} The aim of this study was to elucidate specific features of malignant ascites metabolome and proteome. To omit components that b...
ORGANISM(S): Homo_sapiens_viruses, Human 
GPM11210030783 | GPMDB
Resource Reanalysis 
ProteomicsProteome profiling of ovarian cancer and cirrhosis ascites
Proteome-metabolome profiling of ovarian cancer ascites reveals novel components involved in intercellular communication http://www.mcponline.org/content/early/2014/09/30/mcp.M114.041194.full.pdf+html?sid=78e7a955-fa54-4ded-b296-89f1fb6adbec
ORGANISM(S): Homo Sapiens (ncbitaxon:9606) 
2016-07-19 | MSV000079934 | MassIVE
ProteomicsProteome profiling of microvesicles, exosomes and supernatant from SKOV3
Proteome-metabolome profiling of ovarian cancer ascites reveals novel components involved in intercellular communication http://www.mcponline.org/content/early/2014/09/30/mcp.M114.041194.full.pdf+html?sid=78e7a955-fa54-4ded-b296-89f1fb6adbec
ORGANISM(S): Homo Sapiens (ncbitaxon:9606) 
2016-07-22 | MSV000079992 | MassIVE
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