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ProteomicsProteomics of Saccharomyces cerevisiae mutants subjected to lanthanide stress
Next-generation proteomics of Saccharomyces cerevisiae mutants for defining their response to lanthanides.
ORGANISM(S): Saccharomyces cerevisiae (Baker's yeast) 
2022-08-12 | PXD025030 | Pride
Proteome dynamics Lanthanide Proteomics Stress Bacteria Molecular phenotyping 
ProteomicsInteraction between Pseudomonas aeruginosa and Achromobacter xylosoxidans: unravelling the molecular basis of competition affecting P. aeruginosa virulence
Proteomic analysis carried out to elucidate the molecular basis of P. aeruginosa virulence reduction during interaction with A. xylosoxidans
ORGANISM(S): Achromobacter xylosoxidans Pseudomonas aeruginosa 
2025-07-14 | PXD058911 | Pride
Proteomics Bacterial interaction Pathogens 
ProteomicsShotgun proteomics of nucleoids from irradiated Deinococcus cells
Nucleoids have been purified from Deinococcus deserti and Deinococcus radiodurans cells subjected to irradiation and short recovery (six replicates for each strain). The nucleoids have been analyzed by shotgun proteomics as described in Toueille M et al (2012) J Proteomics. Comparative proteomics po...
ORGANISM(S): Deinococcus radiodurans Deinococcus deserti (strain VCD115 / DSM 17065 / LMG 22923) 
2014-01-31 | PXD000196 | Pride
Nucleoids Dna repair Deinococcus deserti Deinococcus radiodurans 
ProteomicsProteome analysis of Bacillus cereus ATCC 14579 and its tspO mutant at late exponential and stationary phases
The proteomes of Bacillus cereus ATCC 14579 and its tspO mutant were established by label-free shotgun proteomics for cells harvested at late exponential and stationary phases. The comparative analysis indicated the molecular modifications induced by the phase transition and by the mutation of the g...
ORGANISM(S): Bacillus cereus (strain ATCC 14579 / DSM 31) 
2025-03-25 | PXD055392 | Pride
Metabolism Bacillus Virulence Proteomics Pathogen Virulence factors Quorum sensing 
ProteomicsAnalysis of the exoproteomes of Bacillus cereus ATCC 14579 and its tspO mutant at late exponential and stationary phases
The exoproteomes of Bacillus cereus ATCC 14579 and its tspO mutant were established by label-free shotgun proteomics for cells harvested at late exponential and stationary phases. The comparative analysis indicated the molecular modifications induced by the phase transition and by the mutation of th...
ORGANISM(S): Bacillus cereus (strain ATCC 14579 / DSM 31) 
2025-03-25 | PXD055393 | Pride
Metabolism Bacillus Virulence Proteomics Exoproteome Pathogen Virulence factors Quorum sensing 
ProteomicsBenchmarking plasma proteomics depletion and enrichment workflows prior to LC-MS/MS analysis
A plasma sample was prepared using multiple depletion and enrichment techniques in order to improve the depth of proteomics analyses.
ORGANISM(S): Homo sapiens (Human) 
2026-06-15 | PXD069187 | Pride
Astral Proteomics Depletion Plasma Enrichment 
ProteomicsLineageFilter: Estimating the taxonomic composition of complex samples using metaproteomics and machine learning
In this study we developped LineageFilter, a new method for refined proteotyping of complex samples using metaproteomics raw data and machine learning. Given a tentative list of taxa, their abundance, and the scores associated to their identified peptides, LineageFilter computes a comprehensive set ...
ORGANISM(S): Salmonella enterica Acinetobacter baumannii Cellulomonas hominis Candida albicans (Yeast) Listeria monocytogenes Thomasclavelia ramosa Enterococcus faecalis (Streptococcus faecalis) Clostridium butyricum Blautia producta Bacillus subtilis Viruses Lactobacillus plantarum Anaerostipes caccae Enterococcus faecium Bacteroides thetaiotaomicron Limosilactobacillus fermentum Cryptococcus neoformans Eukaryota (eucaryotes) Pseudomonas aeruginosa Bacteria Klebsiella pneumoniae Streptoccous pyogenes Escherichia coli Saccharomyces cerevisiae (Baker's yeast) Bifidobacterium longum Staphylococcus aureus 
2024-11-06 | PXD049349 | Pride
Proteomics Bioinformatics 
ProteomicsBacillus cereus growth in aerobiosis condition
Proteome profiles of Bacillus cereus at early, middle, and late exponential growth phases established by high-resolution tandem mass spectrometry
ORGANISM(S): Bacillus cereus (strain ATCC 14579 / DSM 31) 
2022-02-17 | PXD025504 | Pride
Bacillus Growth Cysteines Proteomics Reactive oxygen species Bacteria Aerobiosis Redox state Redox-sensitive proteins 
ProteomicsProteomics of mixtures of specific fractions from microbial isolates for multiplex proteotyping without labeling
This projetc provides tandem mass spectrometry datasets of mixtures of specific fractions from microbial isolates enabling multiplex proteotyping without labeling. A mixture of eleven fractions and a mixture of twenty-one fractions respectively were prepared and analyzed in a single nanoLC-MS/MS run...
ORGANISM(S): Stenotrophomonas maltophilia Serratia marcescens Pseudopedobacter saltans Methylorubrum extorquens Kineococcus radiotolerans Microbacterium oxydans Ralstonia pickettii Sagittula stellata Sphingomonas yabuuchiae 
2025-09-15 | PXD035870 | Pride
Bacterial isolates Proteomics Multiplex Tandem mass spectrometry Taxonomy Proteotyping 
ProteomicsSphingomonas wittichii RW1 shotgun proteomics
Chlorinated congeners of dibenzo-p-dioxin and dibenzofuran are widely dispersed pollutants that can be treated using microorganisms, such as the Sphingomonas wittichii RW1 bacterium, able to transform some of them into non-toxic substances. The enzymes of the upper pathway for dibenzo-p-dioxin degra...
ORGANISM(S): Sphingomonas wittichii 
2013-10-22 | PXD000403 | Pride
Sphingomonas wittichii rw1 dioxin dibenzofuran 
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