Sort   by:  
 Page size 
TranscriptomicsTranscriptional reprogramming of engineered cellobiose-utilizing Saccharomyces cerevisiae in response to cellobiose revealed by RNA-Seq
Saccharomyces cerevisiae cannot metabolize cellobiose in nature. Here, S. cerevisiae was engineered to achieve cellobiose utilization by introducing both a cellodextrin transporter gene (cdt-1) and an intracellular β-glucosidase gene (gh1-1) from Neurospora crassa. We sequenced mRNA from anaerobic e...
ORGANISM(S): Saccharomyces cerevisiae 
2015-04-10 | E-GEOD-54825 | biostudies-arrayexpress
TranscriptomicspBL1 impairs cellobiose metabolism in Lactococcus lactis
pBL1 is a Lactococcus lactis theta-replicating 10.9-kbp plasmid that encodes the synthetic machinery of the bacteriocin Lcn972. In this work, the transcriptomes of exponentially growing L. lactis with and without pBL1 were compared. A discrete response was observed with a total of ten genes showing ...
ORGANISM(S): Lactococcus lactis 
2011-09-14 | E-GEOD-30625 | biostudies-arrayexpress
ProteomicsQUANTITATIVE PROTEOME PROFILING OF NEUROSPORA CRASSA REVEALS A CELLOBIOSE-DEPENDENT NETWORK COORDINATING LIGNOCELLULOLYTIC RESPONSES
Cellulose, particularly the major cellulolytic product cellobiose, can induce the production of enzymes associated with deconstruction of lignocellulose in filamentous fungi. However, the detailed mechanisms underlying this biotechnologically important process remain to be disclosed. Here, the prote...
ORGANISM(S): Neurospora crassa OR74A 
2020-05-15 | PXD011598 | Pride
Quantitative proteomics Cellulase secretion Sps-ms3 Cellobiose Cellulose Upr Protein trafficking Tmt-labeling Cellulase expression 
TranscriptomicsCelR-mediated activation of the cellobiose-utilization gene cluster in Streptococcus pneumoniae
Comparison of the Streptococcus pneumoniae D39 celR mutant compared to D39 wild type in M17 medium+ 0.5 % (w/v) Cellobiose (CM17) The human pathogen Streptococcus pneumoniae harbors many genes encoding phosphotransferase systems (PTSs) and sugar ABC (ATP-binding cassette) transporters, including sy...
ORGANISM(S): Streptococcus pneumoniae D39 
2011-07-24 | E-GEOD-30891 | biostudies-arrayexpress
ProteomicsRecombinant glycosyl hydrolase expression coupled with adaptation resembling sucrose-induction enable cellobiose-to-ethanol conversion and growth in Zymomonas mobilis
We engineered Z. mobilis ZM4 to express a recombinant glycosyl hydrolase (GH) from Caulobacter crescentus and subjected it to an adaptation in cellobiose medium. Growth on cellobiose was achieved after a prolonged lag phase in cellobiose medium that induced changes in gene expression and cell compos...
ORGANISM(S): Zymomonas mobilis 
2020-07-29 | PXD015770 | Pride
Cellobiose utilization Biofuels Oligosaccharide conversion Serial transfer Z. mobilis zm4 Glycosyl hydrolase 
TranscriptomicsCellobiose vs Glucose at time point T2
Comparison of the Streptococcus pneumoniae D39 wild type in M17 medium+ 0.5 % (w/v) Cellobiose (CM17) compared to M17 medium+ 0.5 % (w/v) Glucose (GM17) hervasted at time point T2 The human pathogen Streptococcus pneumoniae has the ability to use the carbon- and energy source cellobiose due to the p...
ORGANISM(S): Streptococcus pneumoniae D39 
2013-02-20 | E-GEOD-43344 | biostudies-arrayexpress
TranscriptomicsCellobiose vs Glucose at time point T1
Comparison of the Streptococcus pneumoniae D39 wild type in M17 medium+ 0.5 % (w/v) Cellobiose (CM17) compared to M17 medium+ 0.5 % (w/v) Glucose (GM17) hervasted at time point T1 The human pathogen Streptococcus pneumoniae has the ability to use the carbon- and energy source cellobiose due to the p...
ORGANISM(S): Streptococcus pneumoniae D39 
2013-02-20 | E-GEOD-43343 | biostudies-arrayexpress
TranscriptomicsExpression profiling of Ruminococcus flavefaciens FD-1 with growth on cellulose or cellobiose
This study compares growth of Ruminococcus flavefaciens FD-1 with cellulose or cellobiose as the carbohydrate substrate. Ruminococcus flavefaciens is a predominant cellulolytic rumen bacterium, which forms a multi-enzyme cellulosome complex that could play an integral role in the ability of this bac...
ORGANISM(S): Ruminococcus flavefaciens FD-1 
2010-05-16 | E-GEOD-15916 | biostudies-arrayexpress
ProteomicsProteomic response to the thaxtomin phytotoxin elicitor cellobiose and to the deletion of the cellulose utilization regulator CebR in Streptomyces scabies
Streptomyces scabies is a plant pathogen responsible for common scab disease on root and tuber crops. The transport of the cellulose by-products cellobiose and cellotriose into the cell induces the biosynthesis of the main phytotoxin thaxtomin A. These carbohydrates bind to the cis-acting sequences ...
ORGANISM(S): Streptomyces scabiei 87.22 
2018-10-18 | PXD007820 | Pride
Streptomyces scabies Lc-mse Pathogenicity Synapt ms 
TranscriptomicsTranscriptional reprogramming of engineered cellobiose-utilizing Saccharomyces cerevisiae in response to cellobiose revealed by RNA-Seq
Saccharomyces cerevisiae cannot metabolize cellobiose in nature. Here, S. cerevisiae was engineered to achieve cellobiose utilization by introducing both a cellodextrin transporter gene (cdt-1) and an intracellular β-glucosidase gene (gh1-1) from Neurospora crassa. We sequenced mRNA from anaerobic e...
ORGANISM(S): Saccharomyces cerevisiae 
2015-04-10 | GSE54825 | GEO
Sort   by:  
 Page size